Re: [MUMmer-help] MUMmer installation on MacOS 10.9.1

[Adam P. <aph...@gm...>]

Hi Roberta,
Those message all look like compiler warnings that can be safely ignored.
Did the code compile successfully? If so, you should be able to run it
without problems.

Best,
-Adam


On Mon, Dec 23, 2013 at 9:31 AM, Roberta Rezende <rob...@ic...
> wrote:

>
>
>
> Hi everybody,
>
> I’m new in bioinformatics and I’m trying to follow some ways to do
> assemblies.
> I’m using MacOS 10.9.1 mavericks and I can’t install MUMmer. During
> installation process I have the following messages …
>
> Could you help me?
>
> Thank you in advance
>
>
> *combineMUMs.cc <http://combinemums.cc/>:109:27: **warning: **conversion
> from string literal to 'char *' is*
> *      deprecated [-Wdeprecated-writable-strings]*
> char  * Error_File_Name = DEFAULT_ERROR_FILE_NAME;
> *                          ^*
> *combineMUMs.cc <http://combinemums.cc/>:26:38: **note: *expanded from
> macro 'DEFAULT_ERROR_FILE_NAME'
> #define  DEFAULT_ERROR_FILE_NAME     "witherrors.gaps"
> *                                     ^*
> *combineMUMs.cc <http://combinemums.cc/>:135:24: **warning: **conversion
> from string literal to 'char *' is*
> *      deprecated [-Wdeprecated-writable-strings]*
> char  * Query_Suffix = "Query";
> *                       ^*
> *combineMUMs.cc <http://combinemums.cc/>:145:22: **warning: **conversion
> from string literal to 'char *' is*
> *      deprecated [-Wdeprecated-writable-strings]*
> char  * Ref_Suffix = "Ref";
> *                     ^*
>
>
>
> *mgaps.cc <http://mgaps.cc/>:533:20: **warning: **conversion from string
> literal to 'char *' is*
> *      deprecated [-Wdeprecated-writable-strings]*
>            label = "#\n";
> *                   ^*
> *mgaps.cc <http://mgaps.cc/>:620:19: **warning: **conversion from string
> literal to 'char *' is*
> *      deprecated [-Wdeprecated-writable-strings]*
>           label = "#\n";
>
>
>
>
>
> *repeat-match.cc <http://repeat-match.cc/>:850:43: **warning: **'&&'
> within '||' [-Wlogical-op-parentheses]*
>                   || i > String_Separator && j > String_Separator)
> *                  ~~ ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~*
> *repeat-match.cc <http://repeat-match.cc/>:850:43: **note: *place
> parentheses around the '&&' expression to
>       silence this warning
>                   || i > String_Separator && j > String_Separator)
> *                                          ^*
>                      (                                           )
>
>
> *show-coords.cc <http://show-coords.cc/>:799:12: **warning: **conversion
> from string literal to 'char *' is*
> *      deprecated [-Wdeprecated-writable-strings]*
>     type = "NUCMER";
> *           ^*
> *show-coords.cc <http://show-coords.cc/>:801:12: **warning: **conversion
> from string literal to 'char *' is*
> *      deprecated [-Wdeprecated-writable-strings]*
>     type = "PROMER";
> *           ^*
> *show-coords.cc <http://show-coords.cc/>:803:12: **warning: **conversion
> from string literal to 'char *' is*
> *      deprecated [-Wdeprecated-writable-strings]*
>     type = "NULL";
> *           ^*
>
>
>
>
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