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From: LiuHailan <lh...@ho...> - 2013-02-22 21:08:16
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Dear Adam Phillippy,
When I used mummerplot to draw graphic based on
your example (H_pylori26695_Eslice.fasta, H_pyloriJ99_Eslice.fasta), I
meet some confusing sentences. as follows:
lhl@tw2:~/Desktop/Mummer$ mummerplot -x "[0,275287]" -y "[0,265111]" -postscript -p mummer 1.mums
defined(%hash) is deprecated at /home/lhl/Desktop/MUMmer3.23/mummerplot line 884.
(Maybe you should just omit the defined()?)
defined(%hash) is deprecated at /home/lhl/Desktop/MUMmer3.23/mummerplot line 894.
(Maybe you should just omit the defined()?)
defined(%hash) is deprecated at /home/lhl/Desktop/MUMmer3.23/mummerplot line 981.
(Maybe you should just omit the defined()?)
defined(%hash) is deprecated at /home/lhl/Desktop/MUMmer3.23/mummerplot line 991.
(Maybe you should just omit the defined()?)
defined(%hash) is deprecated at /home/lhl/Desktop/MUMmer3.23/mummerplot line 1034.
(Maybe you should just omit the defined()?)
defined(%hash) is deprecated at /home/lhl/Desktop/MUMmer3.23/mummerplot line 1044.
(Maybe you should just omit the defined()?)
gnuplot 4.4 patchlevel 3
Reading mummer file 1.mums (use mummer -c)
Writing plot files mummer.fplot, mummer.rplot
Writing gnuplot script mummer.gp
Rendering plot mummer.ps
I can get a plot, but could you tell me the explation of sentences about "defined(%hash) is deprecated at /home/lhl/Desktop/MUMmer3.23/mummerplot line 884, 894, 981, 991, 1034, and 1044. (Maybe you should just omit the defined()?)" ? I wonder if it will influence the result. Thank you very much!
Best regards,
Hailan |