Re: [MUMmer-help] question re Promer and show-snps

[Adam P. <aph...@gm...>]

Hi Maha,
There is no easy way to do that from within MUMmer, either with a tool or by
modifying the code. However, the show-snps output has all the information
necessary to look up a position in the original fasta file, so it would be
easy to write a custom script or use an existing bioinformatics library to
pull the affected nucleotide codon directly from the fasta records.

Best,
-Adam


On Tue, Oct 19, 2010 at 3:50 PM, Farhat Maha <ma...@gm...> wrote:

> Hello, when you show snps from the output delta file of promer, are the
> snps always in protein code, is it possible to change them to be displayed
> in nucleotide code.
> thanks
> Maha
>
>
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