Re: [MUMmer-help] deprecated syntax

[Adam P. <aph...@gm...>]

Hey Alex,
I'll incorporate the change. Thanks.

"Or is this a backward compatibility issue?"

I'm going to start using that as an excuse for all the overdue development
:)

-Adam


On Tue, Oct 12, 2010 at 10:25 AM, Bossers, Alex <Ale...@wu...> wrote:

>  Adam,
>
> I am still a great MUMmer fan and porting the tool to galaxy using some
> wrappers.
> Would it be possible to update the source code to update the deprecated
> syntax in mummerplot at line 1233 of version 3.22?
> Eventhough the tools works it generates extra output to STDOUT and STDERR
> which make pipelining of the tool more difficult. Now I dump STDERR and
> STDOUT to dev/null but that shouldn't be necessary. I modified the local
> source but by an update this will be lost and forgotten....
>
> The old line 1233 could be updated as follows:
>
> Old;
>         "set ticscale 0 0\n",
> New;
>         "set tic scale 0\n",
>
>
> This works like a charm without the mentioned additional deprecated output:
> ---------------------------------------
> Reading delta file out.delta
> Writing plot files out.fplot, out.rplot
> Writing gnuplot script out.gp
> Rendering plot out.png
>
> set ticscale 0 0
>     ^
> "out.gp", line 7: warning: Deprecated syntax - please use 'set tics scale'
> keyword
> ----------------------------------------
>
> Or is this a backward compatibility issue?
>
> Thanks
> Alex
>
>
>
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