In the protein list window,when I double-click a
protein,an error message was popped up and show
nothing after.
I am using the sample file "Triple Encoding SILAC
sample data.wiff" in "QSTAR sample data set number
1",downloaded from home page of msquant.
Logged In: NO
I was able to run MSQuant until version 1.4a8 for analysis of
Finnigan LTQ-FT MS data. After this version (9 and higher) i
experienced severe problems opening the protein validation
window. I have updated .NET from 1.0 to 1.1 and 2.0 and 2.0
SDK but none will help... The old MSQuant version is still working
but as known doesnt work with the new mascot version...
I would be very happy if you could help us out with this problem.
Thanking you in advance,
Yours sincerely,
Hans Wessels
j.wessels@cukz.umcn.nl
So, here's some output of .NET SDK debugger:
'Managed':
Loaded 'c:\windows\microsoft.net\framework\v1.1.4322
\mscorlib.dll', No symbols loaded.
'Managed': Loaded 'C:\Program Files\MSQUANT12
\MSQuant.exe', No symbols loaded.
'Managed':
Loaded 'c:\windows\assembly\gac\system.windows.forms\1.0.500
0.0__b77a5c561934e089\system.windows.forms.dll', No symbols
loaded.
'Managed':
Loaded 'c:\windows\assembly\gac\system\1.0.5000.0__b77a5c56
1934e089\system.dll', No symbols loaded.
'Managed':
Loaded 'c:\windows\assembly\gac\system.drawing\1.0.5000.0__b
03f5f7f11d50a3a\system.drawing.dll', No symbols loaded.
'Managed':
Loaded 'c:\windows\assembly\gac\accessibility\1.0.5000.0__b03f
5f7f11d50a3a\accessibility.dll', No symbols loaded.
'Managed': Loaded 'c:\program files\msquant12\sqlinterface.dll',
No symbols loaded.
'Managed':
Loaded 'c:\windows\assembly\gac\microsoft.visualbasic\7.0.5000.
0__b03f5f7f11d50a3a\microsoft.visualbasic.dll', No symbols
loaded.
'Managed':
Loaded 'c:\windows\assembly\gac\system.xml\1.0.5000.0__b77a5
c561934e089\system.xml.dll', No symbols loaded.
'Managed':
Loaded 'c:\windows\assembly\gac\system.data\1.0.5000.0__b77a
5c561934e089\system.data.dll', No symbols loaded.
'Managed':
Loaded 'c:\windows\assembly\gac\system.runtime.serialization.for
matters.soap\1.0.5000.0__b03f5f7f11d50a3a\system.runtime.seri
alization.formatters.soap.dll', No symbols loaded.
'Managed': Loaded 'c:\program files\msquant12
\interop.finniganrawfile2wraplib.dll', No symbols loaded.
'Managed': Loaded 'c:\program files\msquant12
\axinterop.xcaliburdisplayslib.dll', No symbols loaded.
'Managed': Loaded 'c:\program files\msquant12
\interop.exploredataobjects.dll', No symbols loaded.
'Managed': Loaded 'c:\program files\msquant12
\axinterop.graphcontrollib.dll', No symbols loaded.
'Managed': Loaded 'c:\program files\msquant12
\interop.xcaliburdisplayslib.dll', No symbols loaded.
A first chance exception of
type 'System.Runtime.InteropServices.COMException' occurred
in system.windows.forms.dll
A first chance exception of type 'System.ArgumentException'
occurred in system.windows.forms.dll
A first chance exception of
type 'System.Runtime.InteropServices.COMException' occurred
in system.windows.forms.dll
A first chance exception of type 'System.ArgumentException'
occurred in system.windows.forms.dll
---- DEBUG ASSERTION FAILED ----
---- Assert Short Message ----
PIL ASSERT. Invalid value of spectrumTypeEnum: 229. Should
have been either eIsMSspectrum or eIsFragmentSpectrum.
---- Assert Long Message ----
at betterFinneganRawDataFileHandling.classifySpectrum(Int32
aSpectrumNumber)
at betterFinneganRawDataFileHandling.derived_NewSpectrum
(Int32 aSpectrumNumber, Double aInfoRetentionTime_Seconds,
SpectrumClassificationStructure& anOutSpectrumClassification)
at rawDataFileHandling.newSpectrumCommon(Int32
aSpectrumNumber, spectrumSpecificationStructure
aSpectrumSpecification, Double aInfoRetentionTime_Seconds,
SpectrumClassificationStructure& anOutSpectrumClassification)
at rawDataFileHandling.newSpectrumByRetentionTime(Double
aStartRetentionTime_Seconds, spectrumSpecStructure
aDummy, spectrumSpecificationStructure
anInSpectrumSpecification, SpectrumClassificationStructure&
anOutSpectrumClassification)
at rawDataFileHandling.setSpectrumCONV(Double aRTsecs,
Int32 anExperiment, Int32& anOutSpectrumNumber)
at frmProtValidation.setSpectrumAndDisplay(Double aRTsecs,
Int32 anExperiment)
at frmProtValidation.DisplayNthPeptide(Int32 aVisualIndex,
String& anInMustBeThisSequence)
at frmProtValidation.Init(ProteinHitStructure& aProtHitStru,
String aWiffFileName, String aWiffCompQuantFileName,
frmProteinList& aProteinListForm, Double anA, Double aB,
rawFileInfoStruct aWiffFileInfo, OptionsStruct2& aOptions, Int32
aProteinListIndex, fileSpecStruct[]& aRawFiles,
quantApplication& anApplication, rawDataFileHandling&
aRawDataFileHandling)
at frmProtValidation..ctor(ProteinHitStructure& aProtHitStru,
String aWiffFileName, String aWiffCompQuantFileName,
frmProteinList& aProteinListForm, Double anA, Double aB,
rawFileInfoStruct aWiffFileInfo, OptionsStruct2& aOptions, Int32
aProteinListIndex, fileSpecStruct[]& aRawFiles,
quantApplication& anApplication, rawDataFileHandling&
aRawDataFileHandling)
at frmProteinList.openProtValForm(Int32& aSelectedIdx,
Boolean aNewInstance)
at frmProteinList.lstProtHits_DoubleClick(Object sender,
EventArgs anEvent)
at Control.OnDoubleClick(EventArgs e)
at ListView.WndProc(Message& m)
at ControlNativeWindow.OnMessage(Message& m)
at ControlNativeWindow.WndProc(Message& m)
at NativeWindow.DebuggableCallback(IntPtr hWnd, Int32
msg, IntPtr wparam, IntPtr lparam)
at UnsafeNativeMethods.DispatchMessageW(MSG& msg)
at
ComponentManager.System.Windows.Forms.UnsafeNativeMetho
ds+IMsoComponentManager.FPushMessageLoop(Int32
dwComponentID, Int32 reason, Int32 pvLoopData)
at ThreadContext.RunMessageLoopInner(Int32 reason,
ApplicationContext context)
at ThreadContext.RunMessageLoop(Int32 reason,
ApplicationContext context)
at Application.Run(Form mainForm)
at frmMainForm.Main()
The program '[740] MSQuant.exe: Managed' has exited with code
1073807364 (0x40010004).
Logged In: NO
Dear sir(s),
Some additional info:
A first chance exception of
type 'System.Runtime.InteropServices.COMException' occurred
in system.windows.forms.dll
Additional information: Exception from HRESULT: 0x80040200.
A first chance exception of type 'System.ArgumentException'
occurred in system.windows.forms.dll
Additional information: The source object does not
expose 'IPropertyNotifySink' event interface.
A first chance exception of
type 'System.Runtime.InteropServices.COMException' occurred
in system.windows.forms.dll
Additional information: Exception from HRESULT: 0x80040200.
A first chance exception of type 'System.ArgumentException'
occurred in system.windows.forms.dll
Additional information: The source object does not
expose 'IPropertyNotifySink' event interface.
---- DEBUG ASSERTION FAILED ----
---- Assert Short Message ----
PIL ASSERT. Invalid value of spectrumTypeEnum: 229. Should
have been either eIsMSspectrum or eIsFragmentSpectrum.
---- Assert Long Message ----
Yours sincerely,
Hans Wessels
j.wessels@cukz.umcn.nl