Re: [Msi-workgroups-board] FDA's request for teleconference with MSI chairs

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Hi all,

I am out of office until Tuesday and will then ask all of you for a good 
date/time for a TC. Thanks so far; Oliver

 Thanks Susanna for incredible energy and great determination we need it. 
I
> 
> think it is important that we connect as a group and discuss the next 
> phase of this project and before we share with others. Having a clear 
> vision forward is important. I spoke to Oliver and he promised to 
arrange
> 
> for a conference call to get team together and where we can express our 
> collective thoughts about what should be done next. Then after that i 
> think it is a great opportunity to link with FDA and all others who are 
> interested in this important initiative. What do you think? Oliver do 
you
> 
> want to arrange for the call early October? how can we help? Best Rima
> 
> 
> 
> 
> 
> 
> 
> 
> Susanna <sa...@eb...> 
> 09/26/2007 03:17 PM
> 
> To
> msi...@li..., 
rim...@du..., 
> of...@uc...
> cc
> "Goodsaid, Federico" <Fed...@fd...>
> Subject
> FDA's request for teleconference with MSI chairs
> 
> 
> 
> 
> 
> 
> Dear Rima, Oliver and WGs' chairs,
> 
> In the light of our latest papers, Federico Goodsaid* (FDA's CDER and 
here
> 
> cc-e) suggests having a Webex meeting to discuss the MSI activities.
> As you can see from our communication -copied below- I have suggested 
> inviting the working groups' chairs (or alternative leading people), a 
> total of 5 people.
> 
> I reckon this is a great opportunity, what do you think?
> 
> If your positive, Federico will provide a Webex link from their/FDA 
end. 
> To start identifying possible date and time I have set up a doodle page:
> Go to http://www.doodle.ch/xsv4ur7h43bxvune and enter your availability 
> (Federico, please, you too).
> Please, let me know if you cannot make any of the proposed dates 
(approx 
> last 2 weeks of October and early Nov).
> 
> Best regards,
> Susanna
> 
> * Federico is also responsible for the "Guidance for Industry - 
> Pharmacogenomic Data Submissions" just released by FDA: 
> http://www.fda.gov/CBER/gdlns/pharmdtasubcomp.pdf
> 
> 
> 
> -------- Original Message -------- 
> Subject: 
> RE: Metabolomics standards' papers- Nature Biotechnology and 
Metabolomics
> 
> journal
> Date: 
> Wed, 26 Sep 2007 13:08:31 -0400
> From: 
> "Goodsaid, Federico" <Fed...@fd...>
> To: 
> "Susanna" <sa...@eb...>
> References: 
> 
> 
> 
> Susanna,
>  
> Go ahead. Let me know of possible dates and times to do this.
>  
> Thanks,
>  
> Federico
>  
> Federico Goodsaid, Ph.D.
> Genomics Group
> Office of Clinical Pharmacology
> Office of Translational Science
> Center for Drug Evaluation and Research
> U.S. Food and Drug Administration
> 10903 New Hampshire Avenue, Building 21, Room 3663
> Silver Spring, MD 20903-0002
> phone:  301-796-1535
> email:  Fed...@fd...
>  
>  
> 
> From: Susanna [mailto:sa...@eb...] 
> Sent: Wednesday, September 26, 2007 12:44 PM
> To: Goodsaid, Federico
> Subject: Re: Metabolomics standards' papers- Nature Biotechnology and 
> Metabolomics journal
>  
> Hi Federico,
> 
> I would be happy to help.
> Actually, I should report this to the rest of the MSI Board.
> 
> I lead the ontology working group and provide links with MGED and 
> proteomics standard groups. To provide you with a summary overview of 
the
> 
> MSI activities, my suggestion would be to invite the other working 
groups'
> 
> leaders or other key people (4-5 people max?) . 
> 
> If you wish I can write to the MSI Board and cc to you. Please, let me 
> know.
> 
> Thanks,
> Susanna
> 
> 
> Goodsaid, Federico wrote:
> 
> Susanna,
>  
> Would you be ale to give us a Webex presentation about these standards? 
We
> 
> could provide a Webex link from this end.
>  
> Thanks,
>  
> Federico
>  
> Federico Goodsaid, Ph.D.
> Genomics Group
> Office of Clinical Pharmacology
> Office of Translational Science
> Center for Drug Evaluation and Research
> U.S. Food and Drug Administration
> 10903 New Hampshire Avenue, Building 21, Room 3663
> Silver Spring, MD 20903-0002
> phone:  301-796-1535
> email:  Fed...@fd...
>  
>  
> 
> From: Susanna [mailto:sa...@eb...] 
> Sent: Wednesday, September 26, 2007 10:16 AM
> To: Lord, Peter [PRDUS]
> Cc: Hattan, David G; Jacobson-Kram, David; 'Dix. David (E-mail); 
Goodsaid,
> 
> Federico; Eshete, Feleke; Frueh, Felix; Frank Sistare; Friedlieb 
Pfannkuch
> 
> (E-mail); Gregory Akerman (E-mail); 'Haymes. Kenneth (E-mail); Elayan, 
> Ikram; Fuscoe, James; Jean-Charles. Gautier (E-mail); Jennifer Fostel 
> (E-mail); Jim Stevens (E-mail); Leighton, John K; John. N. Haselden 
> (E-mail); Jonathan. Tugwood (E-mail); Joseph F. Sina (E-mail); KDaniels 
> (E-mail); Laura Suter-Dick {PRBN~Basel} (E-mail); Freed, Lois M; 
> McCarroll. Nancy (E-mail); Michael Lawton (E-mail); Orr, Michael; Mike 
> Waters (E-mail); Nie, Alex [PRDUS]; Pine, P Scott; Roger Ulrich (E-
mail);
> 
> Ronald Snyder (E-mail); Francke, Sabine; Thurmond, Scott; Spanhaak, 
Steven
> 
> [PRDBE]; Choudhuri, Supratim; Syril Pettit; Papoian, Thomas; Tong, 
Weida;
> 
> William Mattes (E-mail); Ying Jiang (E-mail)
> Subject: Metabolomics standards' papers- Nature Biotechnology and 
> Metabolomics journal
>  
> Dear All,
> 
> several open access papers from the Metabolomics Standards Initiative 
> (MSI) are now available.
> We look forward to your comments and participation in the future 
> activities.
> 
> Best regards,
> Susanna
> 
> ********
> Correspondence in Nature Biotechnology 
> (http://www.nature.com/nbt/journal/v25/n8/full/nbt0807-846b.html)
> 
> Sansone SA, Fan T, Goodacre R, Griffin JL, Hardy NW, Kaddurah-Daouk R, 
> Kristal BS, Lindon J, Mendes P, Morrison N, Nikolau B, Robertson D, 
Sumner
> 
> LW, Taylor C, van der Werf M, van Ommen B, Fiehn O. (2007) The 
> Metabolomics Standards Initiative. Nat Biotechnol. 2007 Aug;25(8):846-8.
> 
> Special issue papers in Metabolomics Journal
> (
> http://springerlink.metapress.com/content/j85g85483103/?
p=c2b8952a7cdb44398c0c4f2f7291c0c6&pi=0
> )
>  
> Fiehn, O., Robertson, D., Griffin, J., van der Werf, M., Nikolau, B., 
> Morrison, N., Sumner, L.W., Goodacre, R., Hardy, N.W., Taylor, C., 
Fostel,
> 
> J., Kristal, B. Kaddurah-Daouk, R., Mendes, P., van Ommen, B., Lindon, 
> J.C. & Sansone, S.-A. (2007) The metabolomics standards initiative 
(MSI).
> 
> Metabolomics 3, 175-178.
>  
> Griffin, J.L., Nicholls, A.W., Daykin, C., Heald, S., Keun, H., 
> Schuppe-Koistinen, I., Griffiths, J.R., Cheng, L., Rocca-Serra, P., 
> Rubtsov, D.V. & Robertson, D. (2007) Standard reporting requirements 
for 
> biological samples in metabolomics experiments: mammalian/in vivo 
> experiments. Metabolomics 3, 179-188.
>  
> van der Werf, M.J., Takors, R., Smedsgaard, J., Nielsen, J., Ferenci, 
T.,
> 
> Portais. J.C., Wittmann, C., Hooks, M., Tomassini, A., Oldiges, M., 
> Fostel, J. & Sauer, U. (2007) Standard reporting requirements for 
> biological samples in metabolomics experiments: microbial and in vitro 
> biology experiments. Metabolomics 3, 189-194.
>  
> Fiehn, O., Sumner, L.W., Rhee, S.Y., Ward, J., Dickerson, J., Lange, 
B.M.,
> 
> Lane, G., Roessner, U., Last, R. & Nikolau1, B. (2007) Minimum 
reporting 
> standards for plant biology context information in metabolomic studies. 
> Metabolomics 3, 195-201.
>  
> Morrison, N., Bearden, D., Bundy, J.G., Collette, T., Currie, F., 
Davey, 
> M.P., Haigh, N.S., Hancock, D., Jones, O.A.H., Rochfort, S., Sansone, 
> S.-A., ©tys, D., Teng, Q., Field, D. & Viant, M.R. (2007) Standard 
> reporting requirements for biological samples in metabolomics 
experiments:
> 
> environmental context. Metabolomics 3, 203-210.
>  
> Sumner, L.W., Amberg, A., Barrett, D., Beger, R., Beale, M.H., Daykin, 
C.,
> 
> Fan, T.W.-M., Fiehn, O., Goodacre, R., Griffin, J.L., Hardy, N., 
Higashi,
> 
> R., Kopka, J., Lindon, J.C., Lane, A.N., Marriott, P., Nicholls, A.W., 
> Reily, M.D. & Viant, M. (2007) Proposed minimum reporting standards for 
> chemical analysis. Metabolomics 3, 211-221.
>  
> Rubtsov, D.V., Jenkins, H., Ludwig, C., Easton, J., Viant, M.R., 
Günther,
> 
> U., Griffin, J.L. & Hardy, N. (2007) Proposed reporting requirements 
for 
> the description of NMR-based metabolomics experiments. Metabolomics 3, 
> 223-229.
>  
> Goodacre, R., Broadhurst, D., Smilde, A., Kristal, B.S., Baker, J.D., 
> Beger, R., Bessant, C., Connor, S., Capuani, G., Craig, A., Ebbels, T., 
> Kell, D.B., Manetti, C., Newton, J., Paternostro, G., Somorjai, R., 
> Sjöström, M., Trygg, J. & Wulfert, F. (2007) Proposed minimum reporting 
> standards for data analysis in metabolomics. Metabolomics 3, 231-241.
>  
> Hardy, N.W. & Taylor, C.F. (2007) A roadmap for the establishment of 
> standard data exchange structures for metabolomics. Metabolomics 3, 
> 243-248.
>  
> Sansone, S.-A., Schober, D., Atherton, H.J., Fiehn, O., Jenkins, H., 
> Rocca-Serra, P., Rubtsov, D.V., Spasic, I., Soldatova, L., Taylor, C., 
> Tseng, A., Viant, M.R. & The Ontology Working Group Members (2007) 
> Metabolomics standards initiative - ontology working group - work in 
> progress. Metabolomics 3, 249-256.
>  
>  
> -- 
> Susanna-Assunta Sansone, PhD
>  
> Project - Coordinator
> www.ebi.ac.uk/net-project
>  
>  
>  
>  
>  
> 
> 
> -- 
> Susanna-Assunta Sansone, PhD
>  
> NET Project - Coordinator
>  
> www.ebi.ac.uk/net-project
>  
> The European Bioinformatics Institute   email:  sa...@eb...
> EMBL Outstation - Hinxton               direct: +44 (0)1223 494 691
> Wellcome Trust Genome Campus            fax: +44 (0)1223 494 468
> Cambridge CB10 1SD, UK                  room: A229 
>  
>  
>  
> 
> -- 
> Susanna-Assunta Sansone, PhD
> 
> NET Project - Coordinator
> 
> www.ebi.ac.uk/net-project
>  
> The European Bioinformatics Institute   email:  sa...@eb...
> EMBL Outstation - Hinxton               direct: +44 (0)1223 494 691
> Wellcome Trust Genome Campus            fax: +44 (0)1223 494 468
> Cambridge CB10 1SD, UK                  room: A229 
> 
>  
> 

Dr. Oliver Fiehn, Assoc. Prof.
UC Davis Genome Center 
1315 GBSF Building
451 E. Health Sci. Drive
Davis (CA) 95616

URL      http://fiehnlab.ucdavis.edu/
email    of...@uc...
phone    530-754-8258