EDNA EDNA

Energy Based Multiple Sequence Alignment (MSA) for Binding Sites

Brought to you by: rafikamir

Commit [r2] Maximize Restore History

First Commit

Authored by: rafikamir 2012-05-09

Browse code at this revision

Parent: [r1]

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added	/trunk/IO
added	/trunk/IO/AlignmentWriter.java
added	/trunk/IO/ArgumentHandler.java
added	/trunk/IO/ClustalWriter.java
added	/trunk/IO/CostMatrix.java
added	/trunk/IO/DDNASequenceConverter.java
added	/trunk/IO/FastaWriter.java
added	/trunk/IO/FileFastaWriter.java
added	/trunk/IO/OpalLogWriter.java
added	/trunk/IO/SequenceConverter.java
added	/trunk/IO/SequenceFileReader.java
added	/trunk/IO/StructureFileReader.java
added	/trunk/IO/usage.txt
added	/trunk/Opal.java
added	/trunk/align
added	/trunk/align/Aligner.java
added	/trunk/align/Alignment.java
added	/trunk/align/CompressedAlignmentGraph.java
added	/trunk/align/ConsistencyAligner.java
added	/trunk/align/ConsistencyHeuristicAligner.java
added	/trunk/align/ConsistencyModifiers_AllPairs.java
added	/trunk/align/ConsistencyModifiers_Pair.java
added	/trunk/align/ExactCountAligner.java
added	/trunk/align/ExactCountAligner_Time.java
added	/trunk/align/PairAligner.java

/trunk/IO

Directory.

/trunk/IO/AlignmentWriter.java Diff Switch to side-by-side view

/trunk/IO/ArgumentHandler.java Diff Switch to side-by-side view

/trunk/IO/ClustalWriter.java Diff Switch to side-by-side view

/trunk/IO/CostMatrix.java Diff Switch to side-by-side view

/trunk/IO/DDNASequenceConverter.java Diff Switch to side-by-side view

/trunk/IO/FastaWriter.java Diff Switch to side-by-side view

/trunk/IO/FileFastaWriter.java Diff Switch to side-by-side view

/trunk/IO/OpalLogWriter.java Diff Switch to side-by-side view

/trunk/IO/SequenceConverter.java Diff Switch to side-by-side view

/trunk/IO/SequenceFileReader.java Diff Switch to side-by-side view

/trunk/IO/StructureFileReader.java Diff Switch to side-by-side view

/trunk/IO/usage.txt Diff Switch to side-by-side view

/trunk/Opal.java Diff Switch to side-by-side view

/trunk/align

Directory.

/trunk/align/Aligner.java Diff Switch to side-by-side view

/trunk/align/Alignment.java Diff Switch to side-by-side view

/trunk/align/CompressedAlignmentGraph.java Diff Switch to side-by-side view

/trunk/align/ConsistencyAligner.java Diff Switch to side-by-side view

/trunk/align/ConsistencyHeuristicAligner.java Diff Switch to side-by-side view

/trunk/align/ConsistencyModifiers_AllPairs.java Diff Switch to side-by-side view

/trunk/align/ConsistencyModifiers_Pair.java Diff Switch to side-by-side view

/trunk/align/ExactCountAligner.java Diff Switch to side-by-side view

/trunk/align/ExactCountAligner_Time.java Diff Switch to side-by-side view

/trunk/align/PairAligner.java Diff Switch to side-by-side view

1 2 3 4 > >> (Page 1 of 4)