[moses-smt/mosesdecoder] 5e3ef2: move moses/src/* to moses/

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  Branch: refs/heads/master
  Home:   https://github.com/moses-smt/mosesdecoder
  Commit: 5e3ef23cef6101d2c098eb3445f562e8f595655b
      https://github.com/moses-smt/mosesdecoder/commit/5e3ef23cef6101d2c098eb3445f562e8f595655b
  Author: Hieu Hoang <hie...@gm...>
  Date:   2012-11-12 (Mon, 12 Nov 2012)

  Changed paths:
    M Jamroot
    M OnDiskPt/Jamfile
    M OnDiskPt/OnDiskWrapper.h
    M OnDiskPt/Phrase.cpp
    M OnDiskPt/PhraseNode.cpp
    M OnDiskPt/TargetPhrase.cpp
    M OnDiskPt/TargetPhraseCollection.cpp
    M OnDiskPt/Vocab.h
    M OnDiskPt/Word.cpp
    M OnDiskPt/queryOnDiskPt.cpp
    M contrib/other-builds/moses/.cproject
    M contrib/other-builds/moses/.project
    M mert/Jamfile
    M mira/Jamfile
    M misc/Jamfile
    M moses-chart-cmd/src/Jamfile
    M moses-cmd/src/Jamfile
    A moses/AlignmentInfo.cpp
    A moses/AlignmentInfo.h
    A moses/AlignmentInfoCollection.cpp
    A moses/AlignmentInfoCollection.h
    A moses/AlignmentInfoTest.cpp
    A moses/BilingualDynSuffixArray.cpp
    A moses/BilingualDynSuffixArray.h
    A moses/BitmapContainer.cpp
    A moses/BitmapContainer.h
    A moses/BleuScoreFeature.cpp
    A moses/BleuScoreFeature.h
    A moses/CYKPlusParser/ChartRuleLookupManagerCYKPlus.cpp
    A moses/CYKPlusParser/ChartRuleLookupManagerCYKPlus.h
    A moses/CYKPlusParser/ChartRuleLookupManagerMemory.cpp
    A moses/CYKPlusParser/ChartRuleLookupManagerMemory.h
    A moses/CYKPlusParser/ChartRuleLookupManagerMemoryPerSentence.cpp
    A moses/CYKPlusParser/ChartRuleLookupManagerMemoryPerSentence.h
    A moses/CYKPlusParser/ChartRuleLookupManagerOnDisk.cpp
    A moses/CYKPlusParser/ChartRuleLookupManagerOnDisk.h
    A moses/CYKPlusParser/DotChart.h
    A moses/CYKPlusParser/DotChartInMemory.cpp
    A moses/CYKPlusParser/DotChartInMemory.h
    A moses/CYKPlusParser/DotChartOnDisk.cpp
    A moses/CYKPlusParser/DotChartOnDisk.h
    A moses/ChartCell.cpp
    A moses/ChartCell.h
    A moses/ChartCellCollection.cpp
    A moses/ChartCellCollection.h
    A moses/ChartCellLabel.h
    A moses/ChartCellLabelSet.h
    A moses/ChartHypothesis.cpp
    A moses/ChartHypothesis.h
    A moses/ChartHypothesisCollection.cpp
    A moses/ChartHypothesisCollection.h
    A moses/ChartManager.cpp
    A moses/ChartManager.h
    A moses/ChartParser.cpp
    A moses/ChartParser.h
    A moses/ChartParserCallback.h
    A moses/ChartRuleLookupManager.h
    A moses/ChartTranslationOptionList.cpp
    A moses/ChartTranslationOptionList.h
    A moses/ChartTranslationOptions.cpp
    A moses/ChartTranslationOptions.h
    A moses/ChartTrellisDetour.cpp
    A moses/ChartTrellisDetour.h
    A moses/ChartTrellisDetourQueue.cpp
    A moses/ChartTrellisDetourQueue.h
    A moses/ChartTrellisNode.cpp
    A moses/ChartTrellisNode.h
    A moses/ChartTrellisPath.cpp
    A moses/ChartTrellisPath.h
    A moses/ChartTrellisPathList.h
    A moses/CompactPT/BlockHashIndex.cpp
    A moses/CompactPT/BlockHashIndex.h
    A moses/CompactPT/CanonicalHuffman.h
    A moses/CompactPT/CmphStringVectorAdapter.cpp
    A moses/CompactPT/CmphStringVectorAdapter.h
    A moses/CompactPT/ConsistentPhrases.h
    A moses/CompactPT/Jamfile
    A moses/CompactPT/LexicalReorderingTableCompact.cpp
    A moses/CompactPT/LexicalReorderingTableCompact.h
    A moses/CompactPT/LexicalReorderingTableCreator.cpp
    A moses/CompactPT/LexicalReorderingTableCreator.h
    A moses/CompactPT/ListCoders.h
    A moses/CompactPT/MmapAllocator.h
    A moses/CompactPT/MonotonicVector.h
    A moses/CompactPT/MurmurHash3.cpp
    A moses/CompactPT/MurmurHash3.h
    A moses/CompactPT/PackedArray.h
    A moses/CompactPT/PhraseDecoder.cpp
    A moses/CompactPT/PhraseDecoder.h
    A moses/CompactPT/PhraseDictionaryCompact.cpp
    A moses/CompactPT/PhraseDictionaryCompact.h
    A moses/CompactPT/PhraseTableCreator.cpp
    A moses/CompactPT/PhraseTableCreator.h
    A moses/CompactPT/StringVector.h
    A moses/CompactPT/TargetPhraseCollectionCache.h
    A moses/CompactPT/ThrowingFwrite.cpp
    A moses/CompactPT/ThrowingFwrite.h
    A moses/ConfusionNet.cpp
    A moses/ConfusionNet.h
    A moses/DecodeFeature.cpp
    A moses/DecodeFeature.h
    A moses/DecodeGraph.cpp
    A moses/DecodeGraph.h
    A moses/DecodeStep.cpp
    A moses/DecodeStep.h
    A moses/DecodeStepGeneration.cpp
    A moses/DecodeStepGeneration.h
    A moses/DecodeStepTranslation.cpp
    A moses/DecodeStepTranslation.h
    A moses/Dictionary.cpp
    A moses/Dictionary.h
    A moses/DummyScoreProducers.cpp
    A moses/DummyScoreProducers.h
    A moses/DynSAInclude/FileHandler.cpp
    A moses/DynSAInclude/FileHandler.h
    A moses/DynSAInclude/Jamfile
    A moses/DynSAInclude/RandLMCache.h
    A moses/DynSAInclude/RandLMFilter.h
    A moses/DynSAInclude/fdstream.h
    A moses/DynSAInclude/hash.h
    A moses/DynSAInclude/onlineRLM.h
    A moses/DynSAInclude/params.cpp
    A moses/DynSAInclude/params.h
    A moses/DynSAInclude/perfectHash.h
    A moses/DynSAInclude/quantizer.h
    A moses/DynSAInclude/types.h
    A moses/DynSAInclude/utils.h
    A moses/DynSAInclude/vocab.cpp
    A moses/DynSAInclude/vocab.h
    A moses/DynSuffixArray.cpp
    A moses/DynSuffixArray.h
    A moses/FFState.cpp
    A moses/FFState.h
    A moses/Factor.cpp
    A moses/Factor.h
    A moses/FactorCollection.cpp
    A moses/FactorCollection.h
    A moses/FactorTypeSet.cpp
    A moses/FactorTypeSet.h
    A moses/FeatureFunction.cpp
    A moses/FeatureFunction.h
    A moses/FeatureVector.cpp
    A moses/FeatureVector.h
    A moses/FeatureVectorTest.cpp
    A moses/File.cpp
    A moses/File.h
    A moses/FilePtr.h
    A moses/FloydWarshall.cpp
    A moses/FloydWarshall.h
    A moses/GenerationDictionary.cpp
    A moses/GenerationDictionary.h
    A moses/GlobalLexicalModel.cpp
    A moses/GlobalLexicalModel.h
    A moses/GlobalLexicalModelUnlimited.cpp
    A moses/GlobalLexicalModelUnlimited.h
    A moses/HypoList.h
    A moses/Hypothesis.cpp
    A moses/Hypothesis.h
    A moses/HypothesisStack.cpp
    A moses/HypothesisStack.h
    A moses/HypothesisStackCubePruning.cpp
    A moses/HypothesisStackCubePruning.h
    A moses/HypothesisStackNormal.cpp
    A moses/HypothesisStackNormal.h
    A moses/Incremental/Fill.cpp
    A moses/Incremental/Fill.h
    A moses/Incremental/Manager.cpp
    A moses/Incremental/Manager.h
    A moses/InputFileStream.cpp
    A moses/InputFileStream.h
    A moses/InputType.cpp
    A moses/InputType.h
    A moses/Jamfile
    A moses/LM/Base.cpp
    A moses/LM/Base.h
    A moses/LM/Factory.cpp
    A moses/LM/Factory.h
    A moses/LM/IRST.cpp
    A moses/LM/IRST.h
    A moses/LM/Implementation.cpp
    A moses/LM/Implementation.h
    A moses/LM/Jamfile
    A moses/LM/Joint.cpp
    A moses/LM/Joint.h
    A moses/LM/Ken.cpp
    A moses/LM/Ken.h
    A moses/LM/LDHT.cpp
    A moses/LM/LDHT.h
    A moses/LM/MultiFactor.cpp
    A moses/LM/MultiFactor.h
    A moses/LM/ORLM.cpp
    A moses/LM/ORLM.h
    A moses/LM/ParallelBackoff.cpp
    A moses/LM/ParallelBackoff.h
    A moses/LM/Rand.cpp
    A moses/LM/Rand.h
    A moses/LM/Remote.cpp
    A moses/LM/Remote.h
    A moses/LM/SRI.cpp
    A moses/LM/SRI.h
    A moses/LM/SingleFactor.cpp
    A moses/LM/SingleFactor.h
    A moses/LMList.cpp
    A moses/LMList.h
    A moses/LVoc.cpp
    A moses/LVoc.h
    A moses/LexicalReordering.cpp
    A moses/LexicalReordering.h
    A moses/LexicalReorderingState.cpp
    A moses/LexicalReorderingState.h
    A moses/LexicalReorderingTable.cpp
    A moses/LexicalReorderingTable.h
    A moses/Makefile.am
    A moses/Manager.cpp
    A moses/Manager.h
    A moses/MockHypothesis.cpp
    A moses/MockHypothesis.h
    A moses/MosesTest.cpp
    A moses/NonTerminal.cpp
    A moses/NonTerminal.h
    A moses/ObjectPool.h
    A moses/OutputCollector.h
    A moses/PCNTools.cpp
    A moses/PCNTools.h
    A moses/PDTAimp.h
    A moses/Parameter.cpp
    A moses/Parameter.h
    A moses/PartialTranslOptColl.cpp
    A moses/PartialTranslOptColl.h
    A moses/Phrase.cpp
    A moses/Phrase.h
    A moses/PhraseBoundaryFeature.cpp
    A moses/PhraseBoundaryFeature.h
    A moses/PhraseDictionary.cpp
    A moses/PhraseDictionary.h
    A moses/PhraseDictionaryDynSuffixArray.cpp
    A moses/PhraseDictionaryDynSuffixArray.h
    A moses/PhraseDictionaryMemory.cpp
    A moses/PhraseDictionaryMemory.h
    A moses/PhraseDictionaryNode.cpp
    A moses/PhraseDictionaryNode.h
    A moses/PhraseDictionaryTree.cpp
    A moses/PhraseDictionaryTree.h
    A moses/PhraseDictionaryTreeAdaptor.cpp
    A moses/PhraseDictionaryTreeAdaptor.h
    A moses/PhraseLengthFeature.cpp
    A moses/PhraseLengthFeature.h
    A moses/PhrasePairFeature.cpp
    A moses/PhrasePairFeature.h
    A moses/PrefixTree.h
    A moses/PrefixTreeMap.cpp
    A moses/PrefixTreeMap.h
    A moses/ReorderingConstraint.cpp
    A moses/ReorderingConstraint.h
    A moses/ReorderingStack.cpp
    A moses/ReorderingStack.h
    A moses/RuleCube.cpp
    A moses/RuleCube.h
    A moses/RuleCubeItem.cpp
    A moses/RuleCubeItem.h
    A moses/RuleCubeQueue.cpp
    A moses/RuleCubeQueue.h
    A moses/RuleTable/Loader.h
    A moses/RuleTable/LoaderCompact.cpp
    A moses/RuleTable/LoaderCompact.h
    A moses/RuleTable/LoaderFactory.cpp
    A moses/RuleTable/LoaderFactory.h
    A moses/RuleTable/LoaderHiero.cpp
    A moses/RuleTable/LoaderHiero.h
    A moses/RuleTable/LoaderStandard.cpp
    A moses/RuleTable/LoaderStandard.h
    A moses/RuleTable/PhraseDictionaryALSuffixArray.cpp
    A moses/RuleTable/PhraseDictionaryALSuffixArray.h
    A moses/RuleTable/PhraseDictionaryFuzzyMatch.cpp
    A moses/RuleTable/PhraseDictionaryFuzzyMatch.h
    A moses/RuleTable/PhraseDictionaryNodeSCFG.cpp
    A moses/RuleTable/PhraseDictionaryNodeSCFG.h
    A moses/RuleTable/PhraseDictionaryOnDisk.cpp
    A moses/RuleTable/PhraseDictionaryOnDisk.h
    A moses/RuleTable/PhraseDictionarySCFG.cpp
    A moses/RuleTable/PhraseDictionarySCFG.h
    A moses/RuleTable/Trie.cpp
    A moses/RuleTable/Trie.h
    A moses/RuleTable/UTrie.cpp
    A moses/RuleTable/UTrie.h
    A moses/RuleTable/UTrieNode.cpp
    A moses/RuleTable/UTrieNode.h
    A moses/Scope3Parser/ApplicableRuleTrie.cpp
    A moses/Scope3Parser/ApplicableRuleTrie.h
    A moses/Scope3Parser/IntermediateVarSpanNode.h
    A moses/Scope3Parser/Parser.cpp
    A moses/Scope3Parser/Parser.h
    A moses/Scope3Parser/SentenceMap.h
    A moses/Scope3Parser/StackLattice.h
    A moses/Scope3Parser/StackLatticeBuilder.cpp
    A moses/Scope3Parser/StackLatticeBuilder.h
    A moses/Scope3Parser/StackLatticeSearcher.h
    A moses/Scope3Parser/VarSpanNode.h
    A moses/Scope3Parser/VarSpanTrieBuilder.cpp
    A moses/Scope3Parser/VarSpanTrieBuilder.h
    A moses/ScoreComponentCollection.cpp
    A moses/ScoreComponentCollection.h
    A moses/ScoreComponentCollectionTest.cpp
    A moses/ScoreProducer.cpp
    A moses/ScoreProducer.h
    A moses/Search.cpp
    A moses/Search.h
    A moses/SearchCubePruning.cpp
    A moses/SearchCubePruning.h
    A moses/SearchNormal.cpp
    A moses/SearchNormal.h
    A moses/SearchNormalBatch.cpp
    A moses/SearchNormalBatch.h
    A moses/Sentence.cpp
    A moses/Sentence.h
    A moses/SentenceStats.cpp
    A moses/SentenceStats.h
    A moses/SourceWordDeletionFeature.cpp
    A moses/SourceWordDeletionFeature.h
    A moses/SparsePhraseDictionaryFeature.cpp
    A moses/SparsePhraseDictionaryFeature.h
    A moses/SquareMatrix.cpp
    A moses/SquareMatrix.h
    A moses/StackVec.h
    A moses/StaticData.cpp
    A moses/StaticData.h
    A moses/SyntacticLanguageModel.cpp
    A moses/SyntacticLanguageModel.h
    A moses/SyntacticLanguageModelFiles.h
    A moses/SyntacticLanguageModelState.h
    A moses/TargetBigramFeature.cpp
    A moses/TargetBigramFeature.h
    A moses/TargetBigramFeatureTest.cpp
    A moses/TargetNgramFeature.cpp
    A moses/TargetNgramFeature.h
    A moses/TargetPhrase.cpp
    A moses/TargetPhrase.h
    A moses/TargetPhraseCollection.cpp
    A moses/TargetPhraseCollection.h
    A moses/TargetWordInsertionFeature.cpp
    A moses/TargetWordInsertionFeature.h
    A moses/Terminal.h
    A moses/ThreadPool.cpp
    A moses/ThreadPool.h
    A moses/Timer.cpp
    A moses/Timer.h
    A moses/TranslationOption.cpp
    A moses/TranslationOption.h
    A moses/TranslationOptionCollection.cpp
    A moses/TranslationOptionCollection.h
    A moses/TranslationOptionCollectionConfusionNet.cpp
    A moses/TranslationOptionCollectionConfusionNet.h
    A moses/TranslationOptionCollectionText.cpp
    A moses/TranslationOptionCollectionText.h
    A moses/TranslationOptionList.cpp
    A moses/TranslationOptionList.h
    A moses/TranslationSystem.cpp
    A moses/TranslationSystem.h
    A moses/TreeInput.cpp
    A moses/TreeInput.h
    A moses/TrellisPath.cpp
    A moses/TrellisPath.h
    A moses/TrellisPathCollection.cpp
    A moses/TrellisPathCollection.h
    A moses/TrellisPathList.h
    A moses/TypeDef.h
    A moses/UniqueObject.h
    A moses/UserMessage.cpp
    A moses/UserMessage.h
    A moses/Util.cpp
    A moses/Util.h
    A moses/Word.cpp
    A moses/Word.h
    A moses/WordLattice.cpp
    A moses/WordLattice.h
    A moses/WordTranslationFeature.cpp
    A moses/WordTranslationFeature.h
    A moses/WordsBitmap.cpp
    A moses/WordsBitmap.h
    A moses/WordsRange.cpp
    A moses/WordsRange.h
    A moses/XmlOption.cpp
    A moses/XmlOption.h
    A moses/fuzzy-match/Alignments.cpp
    A moses/fuzzy-match/Alignments.h
    A moses/fuzzy-match/FuzzyMatchWrapper.cpp
    A moses/fuzzy-match/FuzzyMatchWrapper.h
    A moses/fuzzy-match/Match.h
    A moses/fuzzy-match/SentenceAlignment.cpp
    A moses/fuzzy-match/SentenceAlignment.h
    A moses/fuzzy-match/SuffixArray.cpp
    A moses/fuzzy-match/SuffixArray.h
    A moses/fuzzy-match/Vocabulary.cpp
    A moses/fuzzy-match/Vocabulary.h
    A moses/fuzzy-match/create_xml.cpp
    A moses/fuzzy-match/create_xml.h
    A moses/gzfilebuf.h
    A moses/hypergraph.proto
    A moses/rule.proto
    R moses/src/AlignmentInfo.cpp
    R moses/src/AlignmentInfo.h
    R moses/src/AlignmentInfoCollection.cpp
    R moses/src/AlignmentInfoCollection.h
    R moses/src/AlignmentInfoTest.cpp
    R moses/src/BilingualDynSuffixArray.cpp
    R moses/src/BilingualDynSuffixArray.h
    R moses/src/BitmapContainer.cpp
    R moses/src/BitmapContainer.h
    R moses/src/BleuScoreFeature.cpp
    R moses/src/BleuScoreFeature.h
    R moses/src/CYKPlusParser/ChartRuleLookupManagerCYKPlus.cpp
    R moses/src/CYKPlusParser/ChartRuleLookupManagerCYKPlus.h
    R moses/src/CYKPlusParser/ChartRuleLookupManagerMemory.cpp
    R moses/src/CYKPlusParser/ChartRuleLookupManagerMemory.h
    R moses/src/CYKPlusParser/ChartRuleLookupManagerMemoryPerSentence.cpp
    R moses/src/CYKPlusParser/ChartRuleLookupManagerMemoryPerSentence.h
    R moses/src/CYKPlusParser/ChartRuleLookupManagerOnDisk.cpp
    R moses/src/CYKPlusParser/ChartRuleLookupManagerOnDisk.h
    R moses/src/CYKPlusParser/DotChart.h
    R moses/src/CYKPlusParser/DotChartInMemory.cpp
    R moses/src/CYKPlusParser/DotChartInMemory.h
    R moses/src/CYKPlusParser/DotChartOnDisk.cpp
    R moses/src/CYKPlusParser/DotChartOnDisk.h
    R moses/src/ChartCell.cpp
    R moses/src/ChartCell.h
    R moses/src/ChartCellCollection.cpp
    R moses/src/ChartCellCollection.h
    R moses/src/ChartCellLabel.h
    R moses/src/ChartCellLabelSet.h
    R moses/src/ChartHypothesis.cpp
    R moses/src/ChartHypothesis.h
    R moses/src/ChartHypothesisCollection.cpp
    R moses/src/ChartHypothesisCollection.h
    R moses/src/ChartManager.cpp
    R moses/src/ChartManager.h
    R moses/src/ChartParser.cpp
    R moses/src/ChartParser.h
    R moses/src/ChartParserCallback.h
    R moses/src/ChartRuleLookupManager.h
    R moses/src/ChartTranslationOptionList.cpp
    R moses/src/ChartTranslationOptionList.h
    R moses/src/ChartTranslationOptions.cpp
    R moses/src/ChartTranslationOptions.h
    R moses/src/ChartTrellisDetour.cpp
    R moses/src/ChartTrellisDetour.h
    R moses/src/ChartTrellisDetourQueue.cpp
    R moses/src/ChartTrellisDetourQueue.h
    R moses/src/ChartTrellisNode.cpp
    R moses/src/ChartTrellisNode.h
    R moses/src/ChartTrellisPath.cpp
    R moses/src/ChartTrellisPath.h
    R moses/src/ChartTrellisPathList.h
    R moses/src/CompactPT/BlockHashIndex.cpp
    R moses/src/CompactPT/BlockHashIndex.h
    R moses/src/CompactPT/CanonicalHuffman.h
    R moses/src/CompactPT/CmphStringVectorAdapter.cpp
    R moses/src/CompactPT/CmphStringVectorAdapter.h
    R moses/src/CompactPT/ConsistentPhrases.h
    R moses/src/CompactPT/Jamfile
    R moses/src/CompactPT/LexicalReorderingTableCompact.cpp
    R moses/src/CompactPT/LexicalReorderingTableCompact.h
    R moses/src/CompactPT/LexicalReorderingTableCreator.cpp
    R moses/src/CompactPT/LexicalReorderingTableCreator.h
    R moses/src/CompactPT/ListCoders.h
    R moses/src/CompactPT/MmapAllocator.h
    R moses/src/CompactPT/MonotonicVector.h
    R moses/src/CompactPT/MurmurHash3.cpp
    R moses/src/CompactPT/MurmurHash3.h
    R moses/src/CompactPT/PackedArray.h
    R moses/src/CompactPT/PhraseDecoder.cpp
    R moses/src/CompactPT/PhraseDecoder.h
    R moses/src/CompactPT/PhraseDictionaryCompact.cpp
    R moses/src/CompactPT/PhraseDictionaryCompact.h
    R moses/src/CompactPT/PhraseTableCreator.cpp
    R moses/src/CompactPT/PhraseTableCreator.h
    R moses/src/CompactPT/StringVector.h
    R moses/src/CompactPT/TargetPhraseCollectionCache.h
    R moses/src/CompactPT/ThrowingFwrite.cpp
    R moses/src/CompactPT/ThrowingFwrite.h
    R moses/src/ConfusionNet.cpp
    R moses/src/ConfusionNet.h
    R moses/src/DecodeFeature.cpp
    R moses/src/DecodeFeature.h
    R moses/src/DecodeGraph.cpp
    R moses/src/DecodeGraph.h
    R moses/src/DecodeStep.cpp
    R moses/src/DecodeStep.h
    R moses/src/DecodeStepGeneration.cpp
    R moses/src/DecodeStepGeneration.h
    R moses/src/DecodeStepTranslation.cpp
    R moses/src/DecodeStepTranslation.h
    R moses/src/Dictionary.cpp
    R moses/src/Dictionary.h
    R moses/src/DummyScoreProducers.cpp
    R moses/src/DummyScoreProducers.h
    R moses/src/DynSAInclude/FileHandler.cpp
    R moses/src/DynSAInclude/FileHandler.h
    R moses/src/DynSAInclude/Jamfile
    R moses/src/DynSAInclude/RandLMCache.h
    R moses/src/DynSAInclude/RandLMFilter.h
    R moses/src/DynSAInclude/fdstream.h
    R moses/src/DynSAInclude/hash.h
    R moses/src/DynSAInclude/onlineRLM.h
    R moses/src/DynSAInclude/params.cpp
    R moses/src/DynSAInclude/params.h
    R moses/src/DynSAInclude/perfectHash.h
    R moses/src/DynSAInclude/quantizer.h
    R moses/src/DynSAInclude/types.h
    R moses/src/DynSAInclude/utils.h
    R moses/src/DynSAInclude/vocab.cpp
    R moses/src/DynSAInclude/vocab.h
    R moses/src/DynSuffixArray.cpp
    R moses/src/DynSuffixArray.h
    R moses/src/FFState.cpp
    R moses/src/FFState.h
    R moses/src/Factor.cpp
    R moses/src/Factor.h
    R moses/src/FactorCollection.cpp
    R moses/src/FactorCollection.h
    R moses/src/FactorTypeSet.cpp
    R moses/src/FactorTypeSet.h
    R moses/src/FeatureFunction.cpp
    R moses/src/FeatureFunction.h
    R moses/src/FeatureVector.cpp
    R moses/src/FeatureVector.h
    R moses/src/FeatureVectorTest.cpp
    R moses/src/File.cpp
    R moses/src/File.h
    R moses/src/FilePtr.h
    R moses/src/FloydWarshall.cpp
    R moses/src/FloydWarshall.h
    R moses/src/GenerationDictionary.cpp
    R moses/src/GenerationDictionary.h
    R moses/src/GlobalLexicalModel.cpp
    R moses/src/GlobalLexicalModel.h
    R moses/src/GlobalLexicalModelUnlimited.cpp
    R moses/src/GlobalLexicalModelUnlimited.h
    R moses/src/HypoList.h
    R moses/src/Hypothesis.cpp
    R moses/src/Hypothesis.h
    R moses/src/HypothesisStack.cpp
    R moses/src/HypothesisStack.h
    R moses/src/HypothesisStackCubePruning.cpp
    R moses/src/HypothesisStackCubePruning.h
    R moses/src/HypothesisStackNormal.cpp
    R moses/src/HypothesisStackNormal.h
    R moses/src/Incremental/Fill.cpp
    R moses/src/Incremental/Fill.h
    R moses/src/Incremental/Manager.cpp
    R moses/src/Incremental/Manager.h
    R moses/src/InputFileStream.cpp
    R moses/src/InputFileStream.h
    R moses/src/InputType.cpp
    R moses/src/InputType.h
    R moses/src/Jamfile
    R moses/src/LM/Base.cpp
    R moses/src/LM/Base.h
    R moses/src/LM/Factory.cpp
    R moses/src/LM/Factory.h
    R moses/src/LM/IRST.cpp
    R moses/src/LM/IRST.h
    R moses/src/LM/Implementation.cpp
    R moses/src/LM/Implementation.h
    R moses/src/LM/Jamfile
    R moses/src/LM/Joint.cpp
    R moses/src/LM/Joint.h
    R moses/src/LM/Ken.cpp
    R moses/src/LM/Ken.h
    R moses/src/LM/LDHT.cpp
    R moses/src/LM/LDHT.h
    R moses/src/LM/MultiFactor.cpp
    R moses/src/LM/MultiFactor.h
    R moses/src/LM/ORLM.cpp
    R moses/src/LM/ORLM.h
    R moses/src/LM/ParallelBackoff.cpp
    R moses/src/LM/ParallelBackoff.h
    R moses/src/LM/Rand.cpp
    R moses/src/LM/Rand.h
    R moses/src/LM/Remote.cpp
    R moses/src/LM/Remote.h
    R moses/src/LM/SRI.cpp
    R moses/src/LM/SRI.h
    R moses/src/LM/SingleFactor.cpp
    R moses/src/LM/SingleFactor.h
    R moses/src/LMList.cpp
    R moses/src/LMList.h
    R moses/src/LVoc.cpp
    R moses/src/LVoc.h
    R moses/src/LexicalReordering.cpp
    R moses/src/LexicalReordering.h
    R moses/src/LexicalReorderingState.cpp
    R moses/src/LexicalReorderingState.h
    R moses/src/LexicalReorderingTable.cpp
    R moses/src/LexicalReorderingTable.h
    R moses/src/Makefile.am
    R moses/src/Manager.cpp
    R moses/src/Manager.h
    R moses/src/MockHypothesis.cpp
    R moses/src/MockHypothesis.h
    R moses/src/MosesTest.cpp
    R moses/src/NonTerminal.cpp
    R moses/src/NonTerminal.h
    R moses/src/ObjectPool.h
    R moses/src/OutputCollector.h
    R moses/src/PCNTools.cpp
    R moses/src/PCNTools.h
    R moses/src/PDTAimp.h
    R moses/src/Parameter.cpp
    R moses/src/Parameter.h
    R moses/src/PartialTranslOptColl.cpp
    R moses/src/PartialTranslOptColl.h
    R moses/src/Phrase.cpp
    R moses/src/Phrase.h
    R moses/src/PhraseBoundaryFeature.cpp
    R moses/src/PhraseBoundaryFeature.h
    R moses/src/PhraseDictionary.cpp
    R moses/src/PhraseDictionary.h
    R moses/src/PhraseDictionaryDynSuffixArray.cpp
    R moses/src/PhraseDictionaryDynSuffixArray.h
    R moses/src/PhraseDictionaryMemory.cpp
    R moses/src/PhraseDictionaryMemory.h
    R moses/src/PhraseDictionaryNode.cpp
    R moses/src/PhraseDictionaryNode.h
    R moses/src/PhraseDictionaryTree.cpp
    R moses/src/PhraseDictionaryTree.h
    R moses/src/PhraseDictionaryTreeAdaptor.cpp
    R moses/src/PhraseDictionaryTreeAdaptor.h
    R moses/src/PhraseLengthFeature.cpp
    R moses/src/PhraseLengthFeature.h
    R moses/src/PhrasePairFeature.cpp
    R moses/src/PhrasePairFeature.h
    R moses/src/PrefixTree.h
    R moses/src/PrefixTreeMap.cpp
    R moses/src/PrefixTreeMap.h
    R moses/src/ReorderingConstraint.cpp
    R moses/src/ReorderingConstraint.h
    R moses/src/ReorderingStack.cpp
    R moses/src/ReorderingStack.h
    R moses/src/RuleCube.cpp
    R moses/src/RuleCube.h
    R moses/src/RuleCubeItem.cpp
    R moses/src/RuleCubeItem.h
    R moses/src/RuleCubeQueue.cpp
    R moses/src/RuleCubeQueue.h
    R moses/src/RuleTable/Loader.h
    R moses/src/RuleTable/LoaderCompact.cpp
    R moses/src/RuleTable/LoaderCompact.h
    R moses/src/RuleTable/LoaderFactory.cpp
    R moses/src/RuleTable/LoaderFactory.h
    R moses/src/RuleTable/LoaderHiero.cpp
    R moses/src/RuleTable/LoaderHiero.h
    R moses/src/RuleTable/LoaderStandard.cpp
    R moses/src/RuleTable/LoaderStandard.h
    R moses/src/RuleTable/PhraseDictionaryALSuffixArray.cpp
    R moses/src/RuleTable/PhraseDictionaryALSuffixArray.h
    R moses/src/RuleTable/PhraseDictionaryFuzzyMatch.cpp
    R moses/src/RuleTable/PhraseDictionaryFuzzyMatch.h
    R moses/src/RuleTable/PhraseDictionaryNodeSCFG.cpp
    R moses/src/RuleTable/PhraseDictionaryNodeSCFG.h
    R moses/src/RuleTable/PhraseDictionaryOnDisk.cpp
    R moses/src/RuleTable/PhraseDictionaryOnDisk.h
    R moses/src/RuleTable/PhraseDictionarySCFG.cpp
    R moses/src/RuleTable/PhraseDictionarySCFG.h
    R moses/src/RuleTable/Trie.cpp
    R moses/src/RuleTable/Trie.h
    R moses/src/RuleTable/UTrie.cpp
    R moses/src/RuleTable/UTrie.h
    R moses/src/RuleTable/UTrieNode.cpp
    R moses/src/RuleTable/UTrieNode.h
    R moses/src/Scope3Parser/ApplicableRuleTrie.cpp
    R moses/src/Scope3Parser/ApplicableRuleTrie.h
    R moses/src/Scope3Parser/IntermediateVarSpanNode.h
    R moses/src/Scope3Parser/Parser.cpp
    R moses/src/Scope3Parser/Parser.h
    R moses/src/Scope3Parser/SentenceMap.h
    R moses/src/Scope3Parser/StackLattice.h
    R moses/src/Scope3Parser/StackLatticeBuilder.cpp
    R moses/src/Scope3Parser/StackLatticeBuilder.h
    R moses/src/Scope3Parser/StackLatticeSearcher.h
    R moses/src/Scope3Parser/VarSpanNode.h
    R moses/src/Scope3Parser/VarSpanTrieBuilder.cpp
    R moses/src/Scope3Parser/VarSpanTrieBuilder.h
    R moses/src/ScoreComponentCollection.cpp
    R moses/src/ScoreComponentCollection.h
    R moses/src/ScoreComponentCollectionTest.cpp
    R moses/src/ScoreProducer.cpp
    R moses/src/ScoreProducer.h
    R moses/src/Search.cpp
    R moses/src/Search.h
    R moses/src/SearchCubePruning.cpp
    R moses/src/SearchCubePruning.h
    R moses/src/SearchNormal.cpp
    R moses/src/SearchNormal.h
    R moses/src/SearchNormalBatch.cpp
    R moses/src/SearchNormalBatch.h
    R moses/src/Sentence.cpp
    R moses/src/Sentence.h
    R moses/src/SentenceStats.cpp
    R moses/src/SentenceStats.h
    R moses/src/SourceWordDeletionFeature.cpp
    R moses/src/SourceWordDeletionFeature.h
    R moses/src/SparsePhraseDictionaryFeature.cpp
    R moses/src/SparsePhraseDictionaryFeature.h
    R moses/src/SquareMatrix.cpp
    R moses/src/SquareMatrix.h
    R moses/src/StackVec.h
    R moses/src/StaticData.cpp
    R moses/src/StaticData.h
    R moses/src/SyntacticLanguageModel.cpp
    R moses/src/SyntacticLanguageModel.h
    R moses/src/SyntacticLanguageModelFiles.h
    R moses/src/SyntacticLanguageModelState.h
    R moses/src/TargetBigramFeature.cpp
    R moses/src/TargetBigramFeature.h
    R moses/src/TargetBigramFeatureTest.cpp
    R moses/src/TargetNgramFeature.cpp
    R moses/src/TargetNgramFeature.h
    R moses/src/TargetPhrase.cpp
    R moses/src/TargetPhrase.h
    R moses/src/TargetPhraseCollection.cpp
    R moses/src/TargetPhraseCollection.h
    R moses/src/TargetWordInsertionFeature.cpp
    R moses/src/TargetWordInsertionFeature.h
    R moses/src/Terminal.h
    R moses/src/ThreadPool.cpp
    R moses/src/ThreadPool.h
    R moses/src/Timer.cpp
    R moses/src/Timer.h
    R moses/src/TranslationOption.cpp
    R moses/src/TranslationOption.h
    R moses/src/TranslationOptionCollection.cpp
    R moses/src/TranslationOptionCollection.h
    R moses/src/TranslationOptionCollectionConfusionNet.cpp
    R moses/src/TranslationOptionCollectionConfusionNet.h
    R moses/src/TranslationOptionCollectionText.cpp
    R moses/src/TranslationOptionCollectionText.h
    R moses/src/TranslationOptionList.cpp
    R moses/src/TranslationOptionList.h
    R moses/src/TranslationSystem.cpp
    R moses/src/TranslationSystem.h
    R moses/src/TreeInput.cpp
    R moses/src/TreeInput.h
    R moses/src/TrellisPath.cpp
    R moses/src/TrellisPath.h
    R moses/src/TrellisPathCollection.cpp
    R moses/src/TrellisPathCollection.h
    R moses/src/TrellisPathList.h
    R moses/src/TypeDef.h
    R moses/src/UniqueObject.h
    R moses/src/UserMessage.cpp
    R moses/src/UserMessage.h
    R moses/src/Util.cpp
    R moses/src/Util.h
    R moses/src/Word.cpp
    R moses/src/Word.h
    R moses/src/WordLattice.cpp
    R moses/src/WordLattice.h
    R moses/src/WordTranslationFeature.cpp
    R moses/src/WordTranslationFeature.h
    R moses/src/WordsBitmap.cpp
    R moses/src/WordsBitmap.h
    R moses/src/WordsRange.cpp
    R moses/src/WordsRange.h
    R moses/src/XmlOption.cpp
    R moses/src/XmlOption.h
    R moses/src/fuzzy-match/Alignments.cpp
    R moses/src/fuzzy-match/Alignments.h
    R moses/src/fuzzy-match/FuzzyMatchWrapper.cpp
    R moses/src/fuzzy-match/FuzzyMatchWrapper.h
    R moses/src/fuzzy-match/Match.h
    R moses/src/fuzzy-match/SentenceAlignment.cpp
    R moses/src/fuzzy-match/SentenceAlignment.h
    R moses/src/fuzzy-match/SuffixArray.cpp
    R moses/src/fuzzy-match/SuffixArray.h
    R moses/src/fuzzy-match/Vocabulary.cpp
    R moses/src/fuzzy-match/Vocabulary.h
    R moses/src/fuzzy-match/create_xml.cpp
    R moses/src/fuzzy-match/create_xml.h
    R moses/src/gzfilebuf.h
    R moses/src/hypergraph.proto
    R moses/src/rule.proto
    M phrase-extract/Jamfile

  Log Message:
  -----------
  move moses/src/* to moses/


  Commit: 6b354f1e90a216b98b11c1caf26124b5c5aaf910
      https://github.com/moses-smt/mosesdecoder/commit/6b354f1e90a216b98b11c1caf26124b5c5aaf910
  Author: Hieu Hoang <hie...@gm...>
  Date:   2012-11-12 (Mon, 12 Nov 2012)

  Changed paths:
    M contrib/other-builds/OnDiskPt/.cproject
    M contrib/other-builds/moses-chart-cmd/.cproject
    M contrib/other-builds/moses-cmd/.cproject
    M contrib/other-builds/moses/.cproject
    M moses-chart-cmd/src/IOWrapper.cpp
    M moses-chart-cmd/src/IOWrapper.h
    M moses-chart-cmd/src/Main.cpp
    M moses-chart-cmd/src/Main.h
    M moses-chart-cmd/src/TranslationAnalysis.cpp
    M moses-chart-cmd/src/TranslationAnalysis.h
    M moses-chart-cmd/src/mbr.cpp
    M moses-chart-cmd/src/mbr.h
    M moses-cmd/src/IOWrapper.cpp
    M moses-cmd/src/IOWrapper.h
    M moses-cmd/src/LatticeMBR.cpp
    M moses-cmd/src/LatticeMBR.h
    M moses-cmd/src/Main.cpp
    M moses-cmd/src/Main.h
    M moses-cmd/src/TranslationAnalysis.cpp
    M moses-cmd/src/TranslationAnalysis.h
    M moses-cmd/src/mbr.cpp

  Log Message:
  -----------
  move moses/src/* to moses/


  Commit: f8438f80cc99c1dffc19890e292b02b8ae53fb58
      https://github.com/moses-smt/mosesdecoder/commit/f8438f80cc99c1dffc19890e292b02b8ae53fb58
  Author: Hieu Hoang <hie...@gm...>
  Date:   2012-11-12 (Mon, 12 Nov 2012)

  Changed paths:
    M OnDiskPt/Main.cpp
    M OnDiskPt/Main.h
    M mert/mert.cpp

  Log Message:
  -----------
  move moses/src/* to moses/


  Commit: 44f24bd6739805e6ed0ac1275a0b9f027e713801
      https://github.com/moses-smt/mosesdecoder/commit/44f24bd6739805e6ed0ac1275a0b9f027e713801
  Author: Hieu Hoang <hie...@gm...>
  Date:   2012-11-12 (Mon, 12 Nov 2012)

  Changed paths:
    M OnDiskPt/Jamfile
    M jam-files/sanity.jam
    M lm/Jamfile
    M mira/Decoder.cpp
    M mira/Jamfile
    M moses-cmd/src/Jamfile
    M moses/CompactPT/Jamfile
    A moses/src/DynSAInclude/Jamfile
    M search/Jamfile
    M util/Jamfile

  Log Message:
  -----------
  resolved merge conflicts


Compare: https://github.com/moses-smt/mosesdecoder/compare/1bae8e1701da...44f24bd67398