Hi, I would like to ask what is the specific content of hg19_g1k.size, because I did not download successfully. The error message is as follows:
[97;41m Mon Mar 18 16:41:46 CST 2024:Download and index human genome: [m --2024-03-18 16:55:16-- https://www.dropbox.com/s/e1xwzye9hieewxz/human_g1k_v37.fasta.gz Resolving www.dropbox.com (www.dropbox.com)... 2a03:2880:f130:83:face:b00c:0:25de, 192.133.77.133 Connecting to www.dropbox.com (www.dropbox.com)|2a03:2880:f130:83:face:b00c:0:25de|:443... failed: Connection timed out. Connecting to www.dropbox.com (www.dropbox.com)|192.133.77.133|:443... failed: Connection timed out. Retrying.
--2024-03-18 16:59:39-- (try: 2) https://www.dropbox.com/s/e1xwzye9hieewxz/human_g1k_v37.fasta.gz Connecting to www.dropbox.com (www.dropbox.com)|2a03:2880:f130:83:face:b00c:0:25de|:443... failed: Connection timed out. Connecting to www.dropbox.com (www.dropbox.com)|192.133.77.133|:443... failed: Connection timed out. Retrying.
--2024-03-18 17:04:02-- (try: 3) https://www.dropbox.com/s/e1xwzye9hieewxz/human_g1k_v37.fasta.gz Connecting to www.dropbox.com (www.dropbox.com)|2a03:2880:f130:83:face:b00c:0:25de|:443... failed: Connection timed out. Connecting to www.dropbox.com (www.dropbox.com)|192.133.77.133|:443... failed: Connection timed out. Retrying.
--2024-03-18 17:08:25-- (try: 4) https://www.dropbox.com/s/e1xwzye9hieewxz/human_g1k_v37.fasta.gz Connecting to www.dropbox.com (www.dropbox.com)|2a03:2880:f130:83:face:b00c:0:25de|:443... failed: Connection timed out. Connecting to www.dropbox.com (www.dropbox.com)|192.133.77.133|:443... failed: Connection timed out. Retrying.
--2024-03-18 17:12:53-- (try: 5) https://www.dropbox.com/s/e1xwzye9hieewxz/human_g1k_v37.fasta.gz Connecting to www.dropbox.com (www.dropbox.com)|2a03:2880:f130:83:face:b00c:0:25de|:443... failed: Connection timed out. Connecting to www.dropbox.com (www.dropbox.com)|192.133.77.133|:443... failed: Connection timed out. Retrying.
--2024-03-18 17:17:20-- (try: 6) https://www.dropbox.com/s/e1xwzye9hieewxz/human_g1k_v37.fasta.gz Connecting to www.dropbox.com (www.dropbox.com)|2a03:2880:f130:83:face:b00c:0:25de|:443... failed: Connection timed out. Connecting to www.dropbox.com (www.dropbox.com)|192.133.77.133|:443... failed: Connection timed out. Retrying.
--2024-03-18 17:21:47-- (try: 7) https://www.dropbox.com/s/e1xwzye9hieewxz/human_g1k_v37.fasta.gz Connecting to www.dropbox.com (www.dropbox.com)|2a03:2880:f130:83:face:b00c:0:25de|:443... failed: Connection timed out. Connecting to www.dropbox.com (www.dropbox.com)|192.133.77.133|:443... failed: Connection timed out. Retrying.
--2024-03-18 17:26:14-- (try: 8) https://www.dropbox.com/s/e1xwzye9hieewxz/human_g1k_v37.fasta.gz Connecting to www.dropbox.com (www.dropbox.com)|2a03:2880:f130:83:face:b00c:0:25de|:443... failed: Connection timed out. Connecting to www.dropbox.com (www.dropbox.com)|192.133.77.133|:443... failed: Connection timed out. Retrying.
--2024-03-18 17:30:46-- (try: 9) https://www.dropbox.com/s/e1xwzye9hieewxz/human_g1k_v37.fasta.gz Connecting to www.dropbox.com (www.dropbox.com)|2a03:2880:f130:83:face:b00c:0:25de|:443... failed: Connection timed out. Connecting to www.dropbox.com (www.dropbox.com)|192.133.77.133|:443... failed: Connection timed out. Retrying.
--2024-03-18 17:35:17-- (try:10) https://www.dropbox.com/s/e1xwzye9hieewxz/human_g1k_v37.fasta.gz Connecting to www.dropbox.com (www.dropbox.com)|2a03:2880:f130:83:face:b00c:0:25de|:443... failed: Connection timed out. Connecting to www.dropbox.com (www.dropbox.com)|192.133.77.133|:443... failed: Connection timed out. Retrying.
--2024-03-18 17:39:48-- (try:11) https://www.dropbox.com/s/e1xwzye9hieewxz/human_g1k_v37.fasta.gz Connecting to www.dropbox.com (www.dropbox.com)|2a03:2880:f130:83:face:b00c:0:25de|:443... failed: Connection timed out. Connecting to www.dropbox.com (www.dropbox.com)|192.133.77.133|:443... failed: Connection timed out. Retrying.
--2024-03-18 17:44:19-- (try:12) https://www.dropbox.com/s/e1xwzye9hieewxz/human_g1k_v37.fasta.gz Connecting to www.dropbox.com (www.dropbox.com)|2a03:2880:f130:83:face:b00c:0:25de|:443... failed: Connection timed out. Connecting to www.dropbox.com (www.dropbox.com)|192.133.77.133|:443... failed: Connection timed out. Retrying.
--2024-03-18 17:48:49-- (try:13) https://www.dropbox.com/s/e1xwzye9hieewxz/human_g1k_v37.fasta.gz Connecting to www.dropbox.com (www.dropbox.com)|2a03:2880:f130:83:face:b00c:0:25de|:443... failed: Connection timed out. Connecting to www.dropbox.com (www.dropbox.com)|192.133.77.133|:443... failed: Connection timed out. Retrying.
--2024-03-18 17:53:19-- (try:14) https://www.dropbox.com/s/e1xwzye9hieewxz/human_g1k_v37.fasta.gz Connecting to www.dropbox.com (www.dropbox.com)|2a03:2880:f130:83:face:b00c:0:25de|:443... failed: Connection timed out. Connecting to www.dropbox.com (www.dropbox.com)|192.133.77.133|:443... failed: Connection timed out. Retrying.
--2024-03-18 17:57:50-- (try:15) https://www.dropbox.com/s/e1xwzye9hieewxz/human_g1k_v37.fasta.gz Connecting to www.dropbox.com (www.dropbox.com)|2a03:2880:f130:83:face:b00c:0:25de|:443... failed: Connection timed out. Connecting to www.dropbox.com (www.dropbox.com)|192.133.77.133|:443... failed: Connection timed out. Retrying.
--2024-03-18 18:02:20-- (try:16) https://www.dropbox.com/s/e1xwzye9hieewxz/human_g1k_v37.fasta.gz Connecting to www.dropbox.com (www.dropbox.com)|2a03:2880:f130:83:face:b00c:0:25de|:443... failed: Connection timed out. Connecting to www.dropbox.com (www.dropbox.com)|192.133.77.133|:443... failed: Connection timed out. Retrying.
--2024-03-18 18:06:50-- (try:17) https://www.dropbox.com/s/e1xwzye9hieewxz/human_g1k_v37.fasta.gz Connecting to www.dropbox.com (www.dropbox.com)|2a03:2880:f130:83:face:b00c:0:25de|:443... failed: Connection timed out. Connecting to www.dropbox.com (www.dropbox.com)|192.133.77.133|:443... failed: Connection timed out. Retrying.
--2024-03-18 18:11:21-- (try:18) https://www.dropbox.com/s/e1xwzye9hieewxz/human_g1k_v37.fasta.gz Connecting to www.dropbox.com (www.dropbox.com)|2a03:2880:f130:83:face:b00c:0:25de|:443... failed: Connection timed out. Connecting to www.dropbox.com (www.dropbox.com)|192.133.77.133|:443... failed: Connection timed out. Retrying.
--2024-03-18 18:15:51-- (try:19) https://www.dropbox.com/s/e1xwzye9hieewxz/human_g1k_v37.fasta.gz Connecting to www.dropbox.com (www.dropbox.com)|2a03:2880:f130:83:face:b00c:0:25de|:443... failed: Connection timed out. Connecting to www.dropbox.com (www.dropbox.com)|192.133.77.133|:443... failed: Connection timed out. Retrying.
--2024-03-18 18:20:21-- (try:20) https://www.dropbox.com/s/e1xwzye9hieewxz/human_g1k_v37.fasta.gz Connecting to www.dropbox.com (www.dropbox.com)|2a03:2880:f130:83:face:b00c:0:25de|:443... failed: Connection timed out. Connecting to www.dropbox.com (www.dropbox.com)|192.133.77.133|:443... failed: Connection timed out. Giving up.
Attaching the file for your usage Selina, the link seems to be working right now. You could also download it from here
https://ftp.1000genomes.ebi.ac.uk/vol1/ftp/technical/reference/human_g1k_v37.fasta.gz
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Hi,
I would like to ask what is the specific content of hg19_g1k.size, because I did not download successfully.
The error message is as follows:
[97;41m Mon Mar 18 16:41:46 CST 2024:Download and index human genome: [m
--2024-03-18 16:55:16-- https://www.dropbox.com/s/e1xwzye9hieewxz/human_g1k_v37.fasta.gz
Resolving www.dropbox.com (www.dropbox.com)... 2a03:2880:f130:83:face:b00c:0:25de, 192.133.77.133
Connecting to www.dropbox.com (www.dropbox.com)|2a03:2880:f130:83:face:b00c:0:25de|:443... failed: Connection timed out.
Connecting to www.dropbox.com (www.dropbox.com)|192.133.77.133|:443... failed: Connection timed out.
Retrying.
--2024-03-18 16:59:39-- (try: 2) https://www.dropbox.com/s/e1xwzye9hieewxz/human_g1k_v37.fasta.gz
Connecting to www.dropbox.com (www.dropbox.com)|2a03:2880:f130:83:face:b00c:0:25de|:443... failed: Connection timed out.
Connecting to www.dropbox.com (www.dropbox.com)|192.133.77.133|:443... failed: Connection timed out.
Retrying.
--2024-03-18 17:04:02-- (try: 3) https://www.dropbox.com/s/e1xwzye9hieewxz/human_g1k_v37.fasta.gz
Connecting to www.dropbox.com (www.dropbox.com)|2a03:2880:f130:83:face:b00c:0:25de|:443... failed: Connection timed out.
Connecting to www.dropbox.com (www.dropbox.com)|192.133.77.133|:443... failed: Connection timed out.
Retrying.
--2024-03-18 17:08:25-- (try: 4) https://www.dropbox.com/s/e1xwzye9hieewxz/human_g1k_v37.fasta.gz
Connecting to www.dropbox.com (www.dropbox.com)|2a03:2880:f130:83:face:b00c:0:25de|:443... failed: Connection timed out.
Connecting to www.dropbox.com (www.dropbox.com)|192.133.77.133|:443... failed: Connection timed out.
Retrying.
--2024-03-18 17:12:53-- (try: 5) https://www.dropbox.com/s/e1xwzye9hieewxz/human_g1k_v37.fasta.gz
Connecting to www.dropbox.com (www.dropbox.com)|2a03:2880:f130:83:face:b00c:0:25de|:443... failed: Connection timed out.
Connecting to www.dropbox.com (www.dropbox.com)|192.133.77.133|:443... failed: Connection timed out.
Retrying.
--2024-03-18 17:17:20-- (try: 6) https://www.dropbox.com/s/e1xwzye9hieewxz/human_g1k_v37.fasta.gz
Connecting to www.dropbox.com (www.dropbox.com)|2a03:2880:f130:83:face:b00c:0:25de|:443... failed: Connection timed out.
Connecting to www.dropbox.com (www.dropbox.com)|192.133.77.133|:443... failed: Connection timed out.
Retrying.
--2024-03-18 17:21:47-- (try: 7) https://www.dropbox.com/s/e1xwzye9hieewxz/human_g1k_v37.fasta.gz
Connecting to www.dropbox.com (www.dropbox.com)|2a03:2880:f130:83:face:b00c:0:25de|:443... failed: Connection timed out.
Connecting to www.dropbox.com (www.dropbox.com)|192.133.77.133|:443... failed: Connection timed out.
Retrying.
--2024-03-18 17:26:14-- (try: 8) https://www.dropbox.com/s/e1xwzye9hieewxz/human_g1k_v37.fasta.gz
Connecting to www.dropbox.com (www.dropbox.com)|2a03:2880:f130:83:face:b00c:0:25de|:443... failed: Connection timed out.
Connecting to www.dropbox.com (www.dropbox.com)|192.133.77.133|:443... failed: Connection timed out.
Retrying.
--2024-03-18 17:30:46-- (try: 9) https://www.dropbox.com/s/e1xwzye9hieewxz/human_g1k_v37.fasta.gz
Connecting to www.dropbox.com (www.dropbox.com)|2a03:2880:f130:83:face:b00c:0:25de|:443... failed: Connection timed out.
Connecting to www.dropbox.com (www.dropbox.com)|192.133.77.133|:443... failed: Connection timed out.
Retrying.
--2024-03-18 17:35:17-- (try:10) https://www.dropbox.com/s/e1xwzye9hieewxz/human_g1k_v37.fasta.gz
Connecting to www.dropbox.com (www.dropbox.com)|2a03:2880:f130:83:face:b00c:0:25de|:443... failed: Connection timed out.
Connecting to www.dropbox.com (www.dropbox.com)|192.133.77.133|:443... failed: Connection timed out.
Retrying.
--2024-03-18 17:39:48-- (try:11) https://www.dropbox.com/s/e1xwzye9hieewxz/human_g1k_v37.fasta.gz
Connecting to www.dropbox.com (www.dropbox.com)|2a03:2880:f130:83:face:b00c:0:25de|:443... failed: Connection timed out.
Connecting to www.dropbox.com (www.dropbox.com)|192.133.77.133|:443... failed: Connection timed out.
Retrying.
--2024-03-18 17:44:19-- (try:12) https://www.dropbox.com/s/e1xwzye9hieewxz/human_g1k_v37.fasta.gz
Connecting to www.dropbox.com (www.dropbox.com)|2a03:2880:f130:83:face:b00c:0:25de|:443... failed: Connection timed out.
Connecting to www.dropbox.com (www.dropbox.com)|192.133.77.133|:443... failed: Connection timed out.
Retrying.
--2024-03-18 17:48:49-- (try:13) https://www.dropbox.com/s/e1xwzye9hieewxz/human_g1k_v37.fasta.gz
Connecting to www.dropbox.com (www.dropbox.com)|2a03:2880:f130:83:face:b00c:0:25de|:443... failed: Connection timed out.
Connecting to www.dropbox.com (www.dropbox.com)|192.133.77.133|:443... failed: Connection timed out.
Retrying.
--2024-03-18 17:53:19-- (try:14) https://www.dropbox.com/s/e1xwzye9hieewxz/human_g1k_v37.fasta.gz
Connecting to www.dropbox.com (www.dropbox.com)|2a03:2880:f130:83:face:b00c:0:25de|:443... failed: Connection timed out.
Connecting to www.dropbox.com (www.dropbox.com)|192.133.77.133|:443... failed: Connection timed out.
Retrying.
--2024-03-18 17:57:50-- (try:15) https://www.dropbox.com/s/e1xwzye9hieewxz/human_g1k_v37.fasta.gz
Connecting to www.dropbox.com (www.dropbox.com)|2a03:2880:f130:83:face:b00c:0:25de|:443... failed: Connection timed out.
Connecting to www.dropbox.com (www.dropbox.com)|192.133.77.133|:443... failed: Connection timed out.
Retrying.
--2024-03-18 18:02:20-- (try:16) https://www.dropbox.com/s/e1xwzye9hieewxz/human_g1k_v37.fasta.gz
Connecting to www.dropbox.com (www.dropbox.com)|2a03:2880:f130:83:face:b00c:0:25de|:443... failed: Connection timed out.
Connecting to www.dropbox.com (www.dropbox.com)|192.133.77.133|:443... failed: Connection timed out.
Retrying.
--2024-03-18 18:06:50-- (try:17) https://www.dropbox.com/s/e1xwzye9hieewxz/human_g1k_v37.fasta.gz
Connecting to www.dropbox.com (www.dropbox.com)|2a03:2880:f130:83:face:b00c:0:25de|:443... failed: Connection timed out.
Connecting to www.dropbox.com (www.dropbox.com)|192.133.77.133|:443... failed: Connection timed out.
Retrying.
--2024-03-18 18:11:21-- (try:18) https://www.dropbox.com/s/e1xwzye9hieewxz/human_g1k_v37.fasta.gz
Connecting to www.dropbox.com (www.dropbox.com)|2a03:2880:f130:83:face:b00c:0:25de|:443... failed: Connection timed out.
Connecting to www.dropbox.com (www.dropbox.com)|192.133.77.133|:443... failed: Connection timed out.
Retrying.
--2024-03-18 18:15:51-- (try:19) https://www.dropbox.com/s/e1xwzye9hieewxz/human_g1k_v37.fasta.gz
Connecting to www.dropbox.com (www.dropbox.com)|2a03:2880:f130:83:face:b00c:0:25de|:443... failed: Connection timed out.
Connecting to www.dropbox.com (www.dropbox.com)|192.133.77.133|:443... failed: Connection timed out.
Retrying.
--2024-03-18 18:20:21-- (try:20) https://www.dropbox.com/s/e1xwzye9hieewxz/human_g1k_v37.fasta.gz
Connecting to www.dropbox.com (www.dropbox.com)|2a03:2880:f130:83:face:b00c:0:25de|:443... failed: Connection timed out.
Connecting to www.dropbox.com (www.dropbox.com)|192.133.77.133|:443... failed: Connection timed out.
Giving up.
Attaching the file for your usage Selina, the link seems to be working right now. You could also download it from here
https://ftp.1000genomes.ebi.ac.uk/vol1/ftp/technical/reference/human_g1k_v37.fasta.gz