The miRSim tool can generate the synthetic RNA-Seq data in standard fastq/fasta format by utilizing the sequence-specific properties (i.e., seed and xseed (remaining part of the sequence after removing seed)). Additionally, miRSim also generates the ground truth in CSV format that provides information about genomic location, CIGAR string, sequence, and expression counts.

Features

  • miRNA
  • Synthetic RNA-Seq data generation
  • Seed
  • Next Generation Sequencing Data
  • piRNA
  • Paralogues

Project Samples

List of available options in miRSim miRSim at default options Error message in miRSim miRSim output with user defined arguments

Project Activity

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miRSim Web Site

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2021-03-12
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