MicrobeGPS

MicrobeGPS is a bioinformatics tool for the analysis of metagenomic sequencing data. The goal is to profile the composition of metagenomic communities as accurately as possible and present the results to the user in a convenient manner. One main focus is reliability: the tool calculates quality metrics for the estimated candidates and allows the user to identify false candidates easily.

Features

Metagenomic community profiling
Interactive visualization

Project Samples

MicrobeGPS graphical user interface. The detected candidate organisms are listed in the table on the left. Color coding eases differentiating between highly reliable and unreliable identifications. Identified organisms can be selected and inspected. The upper right shows the taxonomic affiliation of the selected organism.

MicrobeGPS analysis pipeline. The tool analyzes SAM files of metagenomic reads mapped to reference genome databases. The pipeline guides the user step-by-step through the analysis and gives feedback on the results of each step. Single steps can be repeated with different parameters without running the whole pipeline again.

Project Activity

See All Activity >

License

BSD License

Follow MicrobeGPS

MicrobeGPS Web Site

Other Useful Business Software

Build Agents and Models on One Platform

Everything you need to build production-ready agents and models. Access 200+ Google and third-party AI models and tools.

Gemini Enterprise Agent Platform is Google Cloud's comprehensive platform for developers to build, scale, govern, and optimize agents and models. Choose from Google's most advanced models and third-party models like Anthropic's Claude Model Family.

Try It Free

Rate This Project

User Reviews

Be the first to post a review of MicrobeGPS!

Additional Project Details

Operating Systems

Linux, Windows

Intended Audience

Advanced End Users, End Users/Desktop, Healthcare Industry, Science/Research

Programming Language

Python

Related Categories

Python Bio-Informatics Software, Python Data Visualization Software

Registered

2014-03-18

Similar Business Software

Grafana Cloud

Grafana Labs delivers the leading AI-powered observability platform, built around Grafana—the world’s most widely adopted open source technology for dashboards and visualization. Recognized as a Leader in the 2026 Gartner® Magic Quadrant™ for Observability Platforms (3x) and furthest in...

See Software
DbVisualizer

DbVisualizer is a universal database client for anyone who works with data, from solo developers and startups to professional teams managing complex environments, including developers, DBAs, analysts, and data engineers working with relational and NoSQL databases. It offers a graphical interface...

See Software
Highcharts

Highcharts is a JavaScript charting library that allows developers to create interactive and visually appealing charts for web applications. It offers a wide range of chart types, including line charts, bar charts, pie charts, scatter plots, and more. It also supports different types of data,...

See Software
DXcharts

DXcharts is a white-label financial charting library. With 1-day integration, impressive native mobile apps, and an optional data feed, Devexperts has created a charting solution that sets new standards in performance. Freedom to choose with 4 tailored options: - Free white-label open...

See Software
Fraud.net

Fraudnet's AI-driven platform empowers enterprises to prevent threats, streamline compliance, and manage risk in real-time. Our sophisticated machine learning models continuously learn from billions of transactions to identify anomalies and predict fraud attacks. Our unified solutions:...

See Software
TradingView Stock Widgets

Grab powerful charts and add real-time quotes onto your site as quickly as it takes you to pour a morning coffee — just copy and paste our simple iFrame codes. TradingView widgets are easily customizable and will fit any UI, just choose your fighter: -Our pride and joy, Advanced Real-Time Chart...

See Software