MicrobeGPS is a bioinformatics tool for the analysis of metagenomic sequencing data. The goal is to profile the composition of metagenomic communities as accurately as possible and present the results to the user in a convenient manner. One main focus is reliability: the tool calculates quality metrics for the estimated candidates and allows the user to identify false candidates easily.

Features

  • Metagenomic community profiling
  • Interactive visualization

Project Samples

MicrobeGPS graphical user interface. The detected candidate organisms are listed in the table on the left. Color coding eases differentiating between highly reliable and unreliable identifications. Identified organisms can be selected and inspected. The upper right shows the taxonomic affiliation of the selected organism. MicrobeGPS analysis pipeline. The tool analyzes SAM files of metagenomic reads mapped to reference genome databases. The pipeline guides the user step-by-step through the analysis and gives feedback on the results of each step. Single steps can be repeated with different parameters without running the whole pipeline again.

Project Activity

See All Activity >

Categories

Bio-Informatics, Data Visualization

License

BSD License

Follow MicrobeGPS

MicrobeGPS Web Site

Other Useful Business Software
Open source. Easy to use. Proven. Complete. Icon
Open source. Easy to use. Proven. Complete.

End to end big data that enables you to spend less time formatting data and more time analyzing it.

Discover HPCC Systems - the truly open source big data solution that allows you to quickly process, analyze and understand large data sets, even data stored in massive, mixed-schema data lakes. Designed by data scientists, HPCC systems is a complete integrated solution from data ingestion and data processing to data delivery. The free online introductory courses and a robust developer community allow you to get started quickly.
Try For FREE Today!
Rate This Project
Login To Rate This Project

User Reviews

Be the first to post a review of MicrobeGPS!

Additional Project Details

Operating Systems

Linux, Windows

Intended Audience

Healthcare Industry, Science/Research, Advanced End Users, End Users/Desktop

Programming Language

Python

Related Categories

Python Bio-Informatics Software, Python Data Visualization Software

Registered

2014-03-18
Report inappropriate content