From: Marco A. <ma...@cs...> - 2004-05-14 15:27:00
|
Shameless plug. :) You are missing NYUMAD http://www.bioinformatics.nyu.edu/Projects/nyumad (quite MAGE-ML compliant already) regards Marco Antoniotti On Friday, May 14, 2004, at 07:05 America/New_York, Jason E. Stewart wrote: > "kaustubh shinde" <shi...@ho...> writes: > >> I am a computer scientist new to bioinformatics. >> My mission is to set up a relational micro array database that I can >> use to store microarray related data in the lab and also it should be >> able to import freely available data from the internet. Actually there >> is not much of lab data and we intend to have a huge repository of >> microarray data from internet. After trying for past 1-1.5 months I >> have come to the conclusion that its anything but easy and I could >> seriously use some help here. > > Don't build your own DB, instead use one of the already existing Open > Source DB's. I will list all the ones that I know about: > > * BASE - http://base.thep.lu.se/ > * SMD - http://genome-www5.stanford.edu/ > * RAD - http://www.cbil.upenn.edu/RAD/php/index.php > * Longhorn DB - http://www.longhornarraydatabase.org/ > * Genex - http://genex.sf.net/ > * ArrayExpress - http://www.ebi.ac.uk/arrayexpress/ > * CaBIO - http://caarray.nci.nih.gov/ > > Some of these support MAGE-ML import and export to varying degrees, > but it is a dificult task. > > Write back if you need more suggestions. > jas. > -- > -- > Jason E. Stewart, PhD. > Chief Architect > Genex Open Source Gene Expression DB http://genex.sf.net/ > > > ------------------------------------------------------- > This SF.Net email is sponsored by: SourceForge.net Broadband > Sign-up now for SourceForge Broadband and get the fastest > 6.0/768 connection for only $19.95/mo for the first 3 months! > http://ads.osdn.com/?ad_id=2562&alloc_id=6184&op=click > _______________________________________________ > Mged-mage mailing list > Mge...@li... > https://lists.sourceforge.net/lists/listinfo/mged-mage > -- Marco Antoniotti http://bioinformatics.nyu.edu NYU Courant Bioinformatics Group tel. +1 - 212 - 998 3488 715 Broadway 10th FL fax. +1 - 212 - 998 3484 New York, NY, 10003, U.S.A. -- Marco Antoniotti http://bioinformatics.nyu.edu NYU Courant Bioinformatics Group tel. +1 - 212 - 998 3488 715 Broadway 10th FL fax. +1 - 212 - 998 3484 New York, NY, 10003, U.S.A. |