Re: [Mged-ontologies] issues in finding the appropriate terms in MGED ontology

[John M. <jcm...@ge...>]

Dear Anandhi,

You might also look at the encoding of that platform at ArrayExpress;  presumably that might be a guide on how one might represent it (either adf or mage-ml). 
http://www.ebi.ac.uk/arrayexpress/files/A-AFFY-33

[though as Chris mentioned, I don't think platform name or reporter name was a property of the MGED Ontology, proper...]


Cheers,
John Matese

On Oct 27, 2012, at 5:06 PM, Chris Stoeckert <sto...@pc...> wrote:

> Dear Anandhi,
> Those are not available in the MGED Ontology. You might consider using OBI (Ontology for Biomedical Investigations; http://obi-ontology.org/page/Main_Page) instead. Most of the useful bits of the MGED Ontology have been incorporated into OBI. We even generated an FGED (functional genomics data) view available at http://bioportal.bioontology.org/ontologies/1123 under Views.
> Cheers,
> 
> Chris Stoeckert, Ph.D.
> Research Professor, Dept. of Genetics
> 1415 Blockley Hall, Center for Bioinformatics
> 423 Guardian Dr., University of Pennsylvania
> Philadelphia, PA 19104
> Ph: 215-573-4409 FAX: 215-573-3111
> http://www.cbil.upenn.edu
> 
> 
> On Oct 26, 2012, at 9:48 AM, Anandhi Iyappan <ana...@gm...> wrote:
> 
>> Hello,
>> 
>> I am making use of the MGED ontology to make an RDF schema for my project. I have problem finding the class and property that denotes the "Platform name (eg:Affymetrix Human Genome U133A Array)" , "platform_id" and the "probe_set_ids (eg: 1007_s_at)". Can you please tell me the following?
>> 
>> 
>> 1. Resource and proerty for Platform Name
>> 
>> 2. Resource and Property for Platform ID
>> 
>> 3. Resource and Property for probe_set_ids
>> 
>> It would be very helpful if you can guide me through these details!!
>> 
>> Regards,
>> Anandhi
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