MetaAnnotator

Hi everyone. NCBI has adopted a new format for its ref sequences. MetaAnnotator currently can not work on latest version of NCBI ref seq. I will update the program soon. You can use the archive version ftp://ftp.ncbi.nlm.nih.gov/genomes/archive/old_refseq/Bacteria/all.fna.tar.gz before that.

Taxonomic annotation is a critical first step for analysis of metagenomic data. Despite a lot of tools being developed, the performance (both running time and accuracy) is still not satisfactory, in particular, when a close species-level reference does not exist in the database. we propose a novel annotation tool, MetaAnnotator, to annotate metagenomics reads which outperforms all existing tools significantly when only genus-level references exist in the database.

Features

Assign reads to specific taxonomy with high accuracy
Probabilistic determination of taxonomy level

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linzhenjian Posted 2017-08-15

this is one of the best project
vipyaohaobin Posted 2017-06-22

Hi everyone. NCBI has adopted a new format for its ref sequences. MetaAnnotator currently can not work on latest version of NCBI ref seq. I will update the program soon. You can use the archive version ftp://ftp.ncbi.nlm.nih.gov/genomes/archive/old_refseq/Bacteria/all.fna.tar.gz before that.