Menu
▾
▴
Re: [mesa-users] Problems with MESA_DIR variable
|
From: Mairan T. <mai...@gm...> - 2015-03-02 17:12:49
|
Hi, Max! That did the trick! Thank you! m. -- Dr. Mairan Teodoro Research Associate Department of Physics Western Michigan University Kalamazoo MI 49008-5252 USA mai...@wm... Science Collaborator NASA Goddard Space Flight Center 8800 Greenbelt Rd. Greenbelt, MD 20771 USA Bldg. 34, Rm. 321, Code 667 301-286-6321 mai...@na... -- On Mon, Mar 2, 2015 at 11:59 AM, Max Katz <max...@gm...> wrote: > You can get rid of the reference to that inlist entirely. All it does is > include the inlist_test_suite in the test_suite directory, and all *that *does > is to again set mesa_dir, which we don't want. > > Max Katz > Department of Physics and Astronomy > Vice President, Graduate Student Organization > Stony Brook University > http://astro.sunysb.edu/mkatz/ > > On Mon, Mar 2, 2015 at 11:54 AM, Mairan Teodoro <mai...@gm...> > wrote: > >> Hi, all! >> >> As an update, setting the full path for the required file in inlist does >> not solve the problem. Below is the message I'm getting now. >> >> ########################### >> argus:high_mass mairan$ pwd >> /Users/mairan/MESA/mairan_models/high_mass >> argus:high_mass mairan$ ./mk >> gfortran -fopenmp -o ../star run_star_extras.o run_star.o run.o >> -L/Users/mairan/MESA/mesa-r7385/lib -lstar -lionization -latm -lcolors >> -lmlt -lnse -lnet -leos -lkap -lrates -lneu -lchem -linterp_2d -linterp_1d >> -lnum -lf2crlibm -lcrlibm -lmtx -lconst -lutils -lmesaklu >> `mesasdk_lapack_link` `mesasdk_blas_link` `mesasdk_pgplot_link` >> `mesasdk_se_link` >> argus:high_mass mairan$ ./rn >> DATE: 2015-03-02 >> TIME: 11:52:11 >> open failed for $MESA_DIR/data/version_number >> please check that mesa_dir is set correctly >> failed in stardata_init >> star_init ierr 2 >> before_evolve_loop ierr 2 >> DATE: 2015-03-02 >> TIME: 11:52:11 >> argus:high_mass mairan$ more inlist >> >> &star_job >> >> mesa_dir = '/Users/mairan/MESA/mesa-r7385' >> >> read_extra_star_job_inlist1 = .true. >> extra_star_job_inlist1_name = >> '/Users/mairan/MESA/mesa-r7385/star/test_suite/inlist_test_suite' >> >> read_extra_star_job_inlist2 = .true. >> extra_star_job_inlist2_name = 'inlist_high_mass' >> >> / ! end of star_job namelist >> >> &controls >> >> read_extra_controls_inlist2 = .true. >> extra_controls_inlist2_name = 'inlist_high_mass' >> >> / ! end of controls namelist >> >> argus:high_mass mairan$ >> ############################### >> >> >> Thanks for any help! >> m. >> >> -- >> Dr. Mairan Teodoro >> >> Research Associate >> Department of Physics >> Western Michigan University >> Kalamazoo MI 49008-5252 USA >> mai...@wm... >> >> Science Collaborator >> NASA Goddard Space Flight Center >> 8800 Greenbelt Rd. >> Greenbelt, MD 20771 USA >> Bldg. 34, Rm. 321, Code 667 >> 301-286-6321 >> mai...@na... >> -- >> >> On Mon, Mar 2, 2015 at 11:50 AM, Mairan Teodoro <mai...@gm... >> > wrote: >> >>> Hi, Ehsan and Max! >>> >>> Thanks for your suggestions! Looks like Max solved part of the problem >>> with the MESA_DIR. Now, when running the 'high_mass' case, I get this error >>> message: >>> >>> ############################ >>> argus:high_mass mairan$ pwd >>> /Users/mairan/MESA/mairan_models/high_mass >>> argus:high_mass mairan$ ./mk >>> gfortran -fopenmp -o ../star run_star_extras.o run_star.o run.o >>> -L/Users/mairan/MESA/mesa-r7385/lib -lstar -lionization -latm -lcolors >>> -lmlt -lnse -lnet -leos -lkap -lrates -lneu -lchem -linterp_2d -linterp_1d >>> -lnum -lf2crlibm -lcrlibm -lmtx -lconst -lutils -lmesaklu >>> `mesasdk_lapack_link` `mesasdk_blas_link` `mesasdk_pgplot_link` >>> `mesasdk_se_link` >>> argus:high_mass mairan$ ./rn >>> DATE: 2015-03-02 >>> TIME: 11:45:34 >>> Failed to open control namelist file ../inlist_test_suite >>> ierr from read_star_job inlist >>> STOP 1 >>> DATE: 2015-03-02 >>> TIME: 11:45:34 >>> argus:high_mass mairan$ >>> ############################ >>> >>> The requested file lies in $MESA_DIR/star/test_suite/inlist_test_suite, >>> but the local inlist file is looking for it one folder above. Do I have to >>> set it to the full path? >>> >>> Thank you! >>> m. >>> >>> -- >>> Dr. Mairan Teodoro >>> >>> Research Associate >>> Department of Physics >>> Western Michigan University >>> Kalamazoo MI 49008-5252 USA >>> mai...@wm... >>> >>> Science Collaborator >>> NASA Goddard Space Flight Center >>> 8800 Greenbelt Rd. >>> Greenbelt, MD 20771 USA >>> Bldg. 34, Rm. 321, Code 667 >>> 301-286-6321 >>> mai...@na... >>> -- >>> >>> On Mon, Mar 2, 2015 at 11:40 AM, Max Katz <max...@gm...> wrote: >>> >>>> I recently ran into an issue when using a recent version of MESA that >>>> the test_suite problems now include the line >>>> >>>> include ../../test_suite_makefile_prefix >>>> >>>> >>>> in the make/makefile. The sole effect of this source is to set >>>> >>>> MESA_DIR = ../../../.. >>>> >>>> >>>> So I needed to comment out the reference to this include to get things >>>> working as expected when you copy a problem outside the MESA hierarchy. >>>> >>>> Max Katz >>>> Department of Physics and Astronomy >>>> Vice President, Graduate Student Organization >>>> Stony Brook University >>>> http://astro.sunysb.edu/mkatz/ >>>> >>>> On Mon, Mar 2, 2015 at 11:09 AM, Ehsan Moravveji <e.m...@gm... >>>> > wrote: >>>> >>>>> Dear Mairan, >>>>> It is always advised not to run the test_suit examples from within >>>>> your source directory. Instead, you can copy them to wherever on your >>>>> machine, compile and run it. >>>>> A full instruction is given in part 1.2 of the following documentation >>>>> http://mesa.sourceforge.net/starting.html#toc-1-9 >>>>> >>>>> Having successfully done that, you can set your MESA_DIR in three >>>>> different ways: >>>>> 1. to add to the first line in your /make/makefile file, e.g. >>>>> MESA_DIR = /Users/me/somewhere/mesa-r7385 >>>>> 2. the first control variable in the &star_job part of inlist is >>>>> "mesa_dir". You can find it in <mesa-root>/star/defalts/star_job.defaults >>>>> then, in your local inlist, you can explicitly set it to wherever >>>>> path your root mesa directory sits, e.g. >>>>> mesa_dir = /Users/me/somewhere/mesa-r7385 >>>>> 3. the third is through setting it up in your ~/.bash_profile, >>>>> followed by sourcing it. >>>>> >>>>> I hope any of these (or a combo) helps you out. >>>>> >>>>> Best >>>>> Ehsan. >>>>> >>>>> >>>>> On Mon, Mar 2, 2015 at 4:48 PM, Mairan Teodoro < >>>>> mai...@gm...> wrote: >>>>> >>>>>> Hi, all! >>>>>> >>>>>> I've just installed MESA on a Macbook Pro (OS X 10.10.2; I've got the >>>>>> successfully installed message at the end), and I'm trying to run some test >>>>>> suites. I have successfully ran the tutorial model and everything worked >>>>>> perfectly fine. >>>>>> >>>>>> However, when I try to run the 'high_mass' or the 'massive_rotating' >>>>>> test suites, I get error messages related (I believe) to the MESA_DIR >>>>>> variable. I have this variable set in my $HOME/.profile file but it seems >>>>>> that the code cannot find the files. For example, when trying to run the >>>>>> 'massive_rotating' test case, this is what I get: >>>>>> >>>>>> ############################## >>>>>> pcp072011pcs: mairan$ cd >>>>>> MESA/mesa-r7385/star/test_suite/massive_rotating/ >>>>>> pcp072011pcs:massive_rotating mairan$ ./mk >>>>>> gfortran -fopenmp -o ../star run_star_extras.o run_star.o run.o >>>>>> -L../../../../lib -lstar -lionization -latm -lcolors -lmlt -lnse -lnet >>>>>> -leos -lkap -lrates -lneu -lchem -linterp_2d -linterp_1d -lnum -lf2crlibm >>>>>> -lcrlibm -lmtx -lconst -lutils -lmesaklu `mesasdk_lapack_link` >>>>>> `mesasdk_blas_link` `mesasdk_pgplot_link` `mesasdk_se_link` >>>>>> pcp072011pcs:massive_rotating mairan$ ./rn >>>>>> DATE: 2015-03-02 >>>>>> TIME: 10:31:38 >>>>>> open failed for $MESA_DIR/data/version_number >>>>>> please check that mesa_dir is set correctly >>>>>> failed in stardata_init >>>>>> star_init ierr 2 >>>>>> before_evolve_loop ierr 2 >>>>>> DATE: 2015-03-02 >>>>>> TIME: 10:31:38 >>>>>> pcp072011pcs:massive_rotating mairan$ echo $MESA_DIR >>>>>> /Users/mairan/MESA/mesa-r7385 >>>>>> pcp072011pcs:massive_rotating mairan$ pwd >>>>>> /Users/mairan/MESA/mesa-r7385/star/test_suite/massive_rotating >>>>>> pcp072011pcs:massive_rotating mairan$ >>>>>> ############################## >>>>>> >>>>>> If I try to run the 'high_mass' test case, the error message is as >>>>>> follows: >>>>>> >>>>>> ############################## >>>>>> /Users/mairan/MESA/mesa-r7385/star/test_suite/high_mass >>>>>> pcp072011pcs:high_mass mairan$ ./mk >>>>>> gfortran -fno-range-check -fmax-errors=100 -fprotect-parens >>>>>> -fno-sign-zero -fopenmp -fbounds-check -Wuninitialized -Warray-bounds -g >>>>>> -ffree-form -x f95-cpp-input -I../../../../include >>>>>> -I/Applications/mesasdk/include -c ../src/run_star_extras.f >>>>>> gfortran -fno-range-check -fmax-errors=100 -fprotect-parens >>>>>> -fno-sign-zero -fopenmp -fbounds-check -Wuninitialized -Warray-bounds -g >>>>>> -ffree-form -x f95-cpp-input -I../../../../include >>>>>> -I/Applications/mesasdk/include -c ../../../../star/job/run_star.f >>>>>> gfortran -fno-range-check -fmax-errors=100 -fprotect-parens >>>>>> -fno-sign-zero -fopenmp -fbounds-check -Wuninitialized -Warray-bounds -g >>>>>> -ffree-form -x f95-cpp-input -I../../../../include >>>>>> -I/Applications/mesasdk/include -c ../src/run.f >>>>>> gfortran -fopenmp -o ../star run_star_extras.o run_star.o run.o >>>>>> -L../../../../lib -lstar -lionization -latm -lcolors -lmlt -lnse -lnet >>>>>> -leos -lkap -lrates -lneu -lchem -linterp_2d -linterp_1d -lnum -lf2crlibm >>>>>> -lcrlibm -lmtx -lconst -lutils -lmesaklu `mesasdk_lapack_link` >>>>>> `mesasdk_blas_link` `mesasdk_pgplot_link` `mesasdk_se_link` >>>>>> pcp072011pcs:high_mass mairan$ ./rn >>>>>> DATE: 2015-03-02 >>>>>> TIME: 10:47:24 >>>>>> open failed for $MESA_DIR/data/version_number >>>>>> please check that mesa_dir is set correctly >>>>>> failed in stardata_init >>>>>> star_init ierr 2 >>>>>> before_evolve_loop ierr 2 >>>>>> DATE: 2015-03-02 >>>>>> TIME: 10:47:24 >>>>>> pcp072011pcs:high_mass mairan$ >>>>>> ############################## >>>>>> >>>>>> Does anyone know how to fix this? Any help would be very appreciated. >>>>>> >>>>>> Best regards! >>>>>> m. >>>>>> >>>>>> -- >>>>>> Dr. Mairan Teodoro >>>>>> >>>>>> Research Associate >>>>>> Department of Physics >>>>>> Western Michigan University >>>>>> Kalamazoo MI 49008-5252 USA >>>>>> mai...@wm... >>>>>> >>>>>> Science Collaborator >>>>>> NASA Goddard Space Flight Center >>>>>> 8800 Greenbelt Rd. >>>>>> Greenbelt, MD 20771 USA >>>>>> Bldg. 34, Rm. 321, Code 667 >>>>>> 301-286-6321 >>>>>> mai...@na... >>>>>> -- >>>>>> >>>>>> >>>>>> ------------------------------------------------------------------------------ >>>>>> Dive into the World of Parallel Programming The Go Parallel Website, >>>>>> sponsored >>>>>> by Intel and developed in partnership with Slashdot Media, is your >>>>>> hub for all >>>>>> things parallel software development, from weekly thought leadership >>>>>> blogs to >>>>>> news, videos, case studies, tutorials and more. Take a look and join >>>>>> the >>>>>> conversation now. http://goparallel.sourceforge.net/ >>>>>> _______________________________________________ >>>>>> mesa-users mailing list >>>>>> mes...@li... >>>>>> https://lists.sourceforge.net/lists/listinfo/mesa-users >>>>>> >>>>>> >>>>> >>>>> >>>>> -- >>>>> Kind regards >>>>> >>>>> Ehsan Moravveji >>>>> http://moravveji.webs.com/ >>>>> >>>>> >>>>> ------------------------------------------------------------------------------ >>>>> Dive into the World of Parallel Programming The Go Parallel Website, >>>>> sponsored >>>>> by Intel and developed in partnership with Slashdot Media, is your hub >>>>> for all >>>>> things parallel software development, from weekly thought leadership >>>>> blogs to >>>>> news, videos, case studies, tutorials and more. Take a look and join >>>>> the >>>>> conversation now. http://goparallel.sourceforge.net/ >>>>> _______________________________________________ >>>>> mesa-users mailing list >>>>> mes...@li... >>>>> https://lists.sourceforge.net/lists/listinfo/mesa-users >>>>> >>>>> >>>> >>> >> > |
