#45 eror 136

[Anirvan Chatterjee]

Dear Mauve-Users,

I have been using Mauve for a while now. However out of nowhere, Mauve has stopped working and returns this error :

trying path /home/anirvan/Downloads/mauve_snapshot_2015-02-13/linux-x64/progressiveMauve
Running alignment.
Executing
/home/anirvan/Downloads/mauve_snapshot_2015-02-13/linux-x64/progressiveMauve
--output=/home/anirvan/Downloads/mauve_snapshot_2015-02-13/dsfgds
--output-guide-tree=/home/anirvan/Downloads/mauve_snapshot_2015-02-13/dsfgds.guide_tree
--backbone-output=/home/anirvan/Downloads/mauve_snapshot_2015-02-13/dsfgds.backbone
/home/anirvan/NGS_Dec15/virus_genomes/ncldv/apmv.fasta/apmv.fasta
/home/anirvan/NGS_Dec15/virus_genomes/ncldv/niemeyer.fasta
Exception FileNotOpened thrown from
Unknown() in gnFileSource.cpp 67
Called by Unknown()
Exited with error code: 136

I have checked the paths, reinstalled the program. I am doing nothing different. Yet, same files and same run is giving me the error.

Your help will be much appreciated.

Best,

Anirvan

[Aaron Darling]

It looks like progressiveMauve is unable to open the first sequence file. I notice the path name contains a duplication, so that it is expecting a file called apmv.fasta inside a directory with the same name. Is that intentional?

[Anirvan Chatterjee]

Dear Aaron,

thank you for your reply.
The duplication was an error. However rectifying that did not solve the
issue. But it did point me to check all files, wherein i found one of the
files was empty. That sorted the issue.

Many thanks for your response, And congratulations to you for making these
tools and continually helping new comers like me.

Best,

Anirvan

On Mon, May 23, 2016 at 4:47 AM, Aaron Darling koadman@users.sf.net wrote:

It looks like progressiveMauve is unable to open the first sequence file.
I notice the path name contains a duplication, so that it is expecting a
file called apmv.fasta inside a directory with the same name. Is that
intentional?

---

• [bugs:#45] https://sourceforge.net/p/mauve/bugs/45/ eror 136*

Status: open
Group: 2.1.0
Created: Wed May 18, 2016 11:56 AM UTC by Anirvan Chatterjee
Last Updated: Wed May 18, 2016 11:56 AM UTC
Owner: nobody

Dear Mauve-Users,

I have been using Mauve for a while now. However out of nowhere, Mauve has
stopped working and returns this error :

trying path
/home/anirvan/Downloads/mauve_snapshot_2015-02-13/linux-x64/progressiveMauve
Running alignment.
Executing

/home/anirvan/Downloads/mauve_snapshot_2015-02-13/linux-x64/progressiveMauve
--output=/home/anirvan/Downloads/mauve_snapshot_2015-02-13/dsfgds

--output-guide-tree=/home/anirvan/Downloads/mauve_snapshot_2015-02-13/dsfgds.guide_tree

--backbone-output=/home/anirvan/Downloads/mauve_snapshot_2015-02-13/dsfgds.backbone
/home/anirvan/NGS_Dec15/virus_genomes/ncldv/apmv.fasta/apmv.fasta
/home/anirvan/NGS_Dec15/virus_genomes/ncldv/niemeyer.fasta
Exception FileNotOpened thrown from
Unknown() in gnFileSource.cpp 67
Called by Unknown()
Exited with error code: 136

I have checked the paths, reinstalled the program. I am doing nothing
different. Yet, same files and same run is giving me the error.

Your help will be much appreciated.

Best,

Anirvan

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