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Re: [Matplotlib-users] Can not display 3D plot !
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From: Geoffrey M. <geo...@gm...> - 2014-11-15 13:50:30
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So, are there new ideas about this problem? My case seems quite rare :/ On 13 November 2014 17:46, Geoffrey Mégardon <geo...@gm...> wrote: > sorry to double post, > > I don't know if it is linked but Pycharms complains about Skeleton > Generation Problems, among the errors there is one which has matplotlib > inside: > > *Failed modules* > Python 2.7.8 (C:\Anaconda\python.exe) > dde > matplotlib._cntr > win32ui > win32uiole > Generation of skeletons for the modules above will be tried again when the > modules are updated or a new version of generator is available > > On 13 November 2014 17:35, Geoffrey Mégardon <geo...@gm...> > wrote: > >> I will have a look to faulthandler but I never used it before. >> >> To use savefig() leads to the same crash. >> >> The two first examples on this pages work fine: >> http://matplotlib.org/mpl_toolkits/axes_grid/users/overview.html >> >> The first example from: http://matplotlib.org/basemap/users/examples.html >> send back an error telling I do not have a module Basemap: >> Traceback (most recent call last): >> File "C:\Users\User\Google Drive\Work\tryAxesGrid.py", line 1, in >> <module> >> from mpl_toolkits.basemap import Basemap >> ImportError: No module named basemap >> >> Here the previously cited traceback provided by windows 8.1: >> >> Version=1 >> EventType=APPCRASH >> EventTime=130603719401981342 >> ReportType=2 >> Consent=1 >> UploadTime=130603719404121474 >> ReportIdentifier=4a8084e1-6b57-11e4-bebc-48d22435da2b >> IntegratorReportIdentifier=4a8084e0-6b57-11e4-bebc-48d22435da2b >> NsAppName=python.exe >> Response.type=4 >> Sig[0].Name=Application Name >> Sig[0].Value=python.exe >> Sig[1].Name=Application Version >> Sig[1].Value=0.0.0.0 >> Sig[2].Name=Application Timestamp >> Sig[2].Value=53b4679e >> Sig[3].Name=Fault Module Name >> Sig[3].Value=_dotblas.pyd >> Sig[4].Name=Fault Module Version >> Sig[4].Value=0.0.0.0 >> Sig[5].Name=Fault Module Timestamp >> Sig[5].Value=545678cb >> Sig[6].Name=Exception Code >> Sig[6].Value=c000001d >> Sig[7].Name=Exception Offset >> Sig[7].Value=0000000000324022 >> DynamicSig[1].Name=OS Version >> DynamicSig[1].Value=6.3.9600.2.0.0.768.101 >> DynamicSig[2].Name=Locale ID >> DynamicSig[2].Value=2057 >> DynamicSig[22].Name=Additional Information 1 >> DynamicSig[22].Value=00a8 >> DynamicSig[23].Name=Additional Information 2 >> DynamicSig[23].Value=00a81cae033b06467abfa2fb5dae54f2 >> DynamicSig[24].Name=Additional Information 3 >> DynamicSig[24].Value=bca9 >> DynamicSig[25].Name=Additional Information 4 >> DynamicSig[25].Value=bca99a98a9c8e88898e6500171ba1359 >> UI[2]=C:\Users\User\Anaconda\python.exe >> UI[3]=python.exe has stopped working >> UI[4]=Windows can check online for a solution to the problem. >> UI[5]=Check online for a solution and close the program >> UI[6]=Check online for a solution later and close the program >> UI[7]=Close the program >> LoadedModule[0]=C:\Users\User\Anaconda\python.exe >> LoadedModule[1]=C:\WINDOWS\SYSTEM32\ntdll.dll >> LoadedModule[2]=C:\WINDOWS\system32\KERNEL32.DLL >> LoadedModule[3]=C:\WINDOWS\system32\KERNELBASE.dll >> LoadedModule[4]=C:\Users\User\Anaconda\python27.dll >> >> LoadedModule[5]=C:\WINDOWS\WinSxS\amd64_microsoft.vc90.crt_1fc8b3b9a1e18e3b_9.0.30729.8387_none_08e793bfa83a89b5\MSVCR90.dll >> LoadedModule[6]=C:\WINDOWS\system32\USER32.dll >> LoadedModule[7]=C:\WINDOWS\system32\ADVAPI32.dll >> LoadedModule[8]=C:\WINDOWS\system32\SHELL32.dll >> LoadedModule[9]=C:\WINDOWS\system32\GDI32.dll >> LoadedModule[10]=C:\WINDOWS\system32\msvcrt.dll >> LoadedModule[11]=C:\WINDOWS\SYSTEM32\sechost.dll >> LoadedModule[12]=C:\WINDOWS\system32\RPCRT4.dll >> LoadedModule[13]=C:\WINDOWS\SYSTEM32\combase.dll >> LoadedModule[14]=C:\WINDOWS\system32\SHLWAPI.dll >> LoadedModule[15]=C:\WINDOWS\system32\IMM32.DLL >> LoadedModule[16]=C:\WINDOWS\system32\MSCTF.dll >> LoadedModule[17]=C:\Users\User\Anaconda\DLLs\_hashlib.pyd >> LoadedModule[18]=C:\WINDOWS\SYSTEM32\CRYPTSP.dll >> LoadedModule[19]=C:\WINDOWS\system32\rsaenh.dll >> LoadedModule[20]=C:\WINDOWS\SYSTEM32\bcrypt.dll >> LoadedModule[21]=C:\WINDOWS\SYSTEM32\CRYPTBASE.dll >> LoadedModule[22]=C:\WINDOWS\SYSTEM32\bcryptPrimitives.dll >> LoadedModule[23]=C:\Users\User\Anaconda\DLLs\_socket.pyd >> LoadedModule[24]=C:\WINDOWS\system32\WS2_32.dll >> LoadedModule[25]=C:\WINDOWS\system32\NSI.dll >> LoadedModule[26]=C:\Users\User\Anaconda\DLLs\_ssl.pyd >> >> LoadedModule[27]=C:\Users\User\Anaconda\lib\site-packages\numpy\core\multiarray.pyd >> >> LoadedModule[28]=C:\Users\User\Anaconda\lib\site-packages\numpy\core\umath.pyd >> >> LoadedModule[29]=C:\Users\User\Anaconda\lib\site-packages\numpy\core\_dotblas.pyd >> >> LoadedModule[30]=C:\Users\User\Anaconda\lib\site-packages\numpy\core\libiomp5md.dll >> >> LoadedModule[31]=C:\Users\User\Anaconda\lib\site-packages\numpy\core\scalarmath.pyd >> >> LoadedModule[32]=C:\Users\User\Anaconda\lib\site-packages\numpy\lib\_compiled_base.pyd >> >> LoadedModule[33]=C:\Users\User\Anaconda\lib\site-packages\numpy\linalg\lapack_lite.pyd >> >> LoadedModule[34]=C:\Users\User\Anaconda\lib\site-packages\numpy\linalg\_umath_linalg.pyd >> >> LoadedModule[35]=C:\Users\User\Anaconda\lib\site-packages\numpy\fft\fftpack_lite.pyd >> >> LoadedModule[36]=C:\Users\User\Anaconda\lib\site-packages\numpy\random\mtrand.pyd >> LoadedModule[37]=C:\Users\User\Anaconda\DLLs\_ctypes.pyd >> LoadedModule[38]=C:\WINDOWS\system32\ole32.dll >> LoadedModule[39]=C:\WINDOWS\system32\OLEAUT32.dll >> >> LoadedModule[40]=C:\Users\User\Anaconda\lib\site-packages\matplotlib\_path.pyd >> >> LoadedModule[41]=C:\WINDOWS\WinSxS\amd64_microsoft.vc90.crt_1fc8b3b9a1e18e3b_9.0.30729.8387_none_08e793bfa83a89b5\MSVCP90.dll >> >> LoadedModule[42]=C:\Users\User\Anaconda\lib\site-packages\matplotlib\ft2font.pyd >> LoadedModule[43]=C:\Users\User\Anaconda\DLLs\unicodedata.pyd >> >> LoadedModule[44]=C:\Users\User\Anaconda\lib\site-packages\matplotlib\_png.pyd >> LoadedModule[45]=C:\Users\User\Anaconda\DLLs\_tkinter.pyd >> LoadedModule[46]=C:\Users\User\Anaconda\DLLs\tcl85.dll >> LoadedModule[47]=C:\Users\User\Anaconda\DLLs\tk85.dll >> LoadedModule[48]=C:\WINDOWS\system32\COMDLG32.dll >> >> LoadedModule[49]=C:\WINDOWS\WinSxS\amd64_microsoft.windows.common-controls_6595b64144ccf1df_5.82.9600.16384_none_34a8918f959016ea\COMCTL32.dll >> LoadedModule[50]=C:\WINDOWS\SYSTEM32\SHCORE.DLL >> LoadedModule[51]=C:\Users\User\Anaconda\lib\site-packages\PIL\_imaging.pyd >> >> LoadedModule[52]=C:\Users\User\Anaconda\lib\site-packages\matplotlib\_cntr.pyd >> >> LoadedModule[53]=C:\Users\User\Anaconda\lib\site-packages\matplotlib\_image.pyd >> >> LoadedModule[54]=C:\Users\User\Anaconda\lib\site-packages\matplotlib\_tri.pyd >> >> LoadedModule[55]=C:\Users\User\Anaconda\lib\site-packages\matplotlib\_qhull.pyd >> >> LoadedModule[56]=C:\Users\User\Anaconda\lib\site-packages\matplotlib\backends\_backend_agg.pyd >> LoadedModule[57]=C:\Users\User\Anaconda\lib\site-packages\sip.pyd >> LoadedModule[58]=C:\Users\User\Anaconda\lib\site-packages\PyQt4\QtCore.pyd >> >> LoadedModule[59]=C:\Users\User\Anaconda\lib\site-packages\PyQt4\QtCore4.dll >> LoadedModule[60]=C:\Users\User\Anaconda\lib\site-packages\PyQt4\QtGui.pyd >> LoadedModule[61]=C:\Users\User\Anaconda\lib\site-packages\PyQt4\QtGui4.dll >> LoadedModule[62]=C:\WINDOWS\SYSTEM32\WINMM.dll >> LoadedModule[63]=C:\WINDOWS\SYSTEM32\WINSPOOL.DRV >> LoadedModule[64]=C:\WINDOWS\SYSTEM32\WINMMBASE.dll >> LoadedModule[65]=C:\WINDOWS\SYSTEM32\cfgmgr32.dll >> LoadedModule[66]=C:\WINDOWS\SYSTEM32\DEVOBJ.dll >> LoadedModule[67]=C:\WINDOWS\system32\uxtheme.dll >> LoadedModule[68]=C:\WINDOWS\system32\dwmapi.dll >> LoadedModule[69]=C:\WINDOWS\SYSTEM32\kernel.appcore.dll >> FriendlyEventName=Stopped working >> ConsentKey=APPCRASH >> AppName=python.exe >> AppPath=C:\Users\User\Anaconda\python.exe >> NsPartner=windows >> NsGroup=windows8 >> ApplicationIdentity=5B036AF1EC2E20F320DBF28D119DE93D >> >> On 13 November 2014 17:05, Benjamin Root <ben...@ou...> wrote: >> >>> Yeah, I am at a real loss here. Can you try one of the axes_grid1 >>> examples? Also, how about the basemap examples? Those are both mpl_toolkit >>> packages as well and might behave similarly. Also, it would be interesting >>> to figure out at exactly which step the failure happens. There is a package >>> called "faulthandler" that is really useful for that: >>> http://faulthandler.readthedocs.org/en/latest/ It is a bit limited on >>> Windows, but it is better than nothing. >>> Also, does it fail regardless if you are doing savefig() or show()? >>> >>> Unfortunately, the "traceback" info you provided doesn't seem to be >>> encoded properly (or at least, not auto-detectable). >>> >>> Ben Root >>> >>> On Thu, Nov 13, 2014 at 4:57 PM, Geoffrey Mégardon < >>> geo...@gm...> wrote: >>> >>>> That returns: >>>> C:\Anaconda\lib\site-packages\matplotlib\__init__.pyc >>>> C:\Anaconda\lib\site-packages\mpl_toolkits\mplot3d\__init__.pyc >>>> >>>> On 13 November 2014 16:40, Benjamin Root <ben...@ou...> wrote: >>>> >>>>> No OpenGL. The 3d graphics all goes through the same layering engine >>>>> as the 2D plots. They aren't real 3D plots but rather what I like to call >>>>> "2.1D" plots. A single point of a 3D element is chosen to determine how to >>>>> layer it with everything else. So, it is very easy to get visualization >>>>> artifacts, especially with polygons. >>>>> >>>>> Do this from python: >>>>> >>>>> import matplotlib >>>>> import mpl_toolkits.mplot3d >>>>> print matplotlib.__file__ >>>>> print mpl_toolkits.mplot3d.__file__ >>>>> >>>>> And tell us what that returns. >>>>> >>>>> Cheers! >>>>> Ben Root >>>>> >>>>> >>>>> >>>>> On Thu, Nov 13, 2014 at 3:49 PM, Paul Hobson <pmh...@gm...> >>>>> wrote: >>>>> >>>>>> No clue about that. BTW, I'll i was suggestion was to create a new >>>>>> conda enviorment: >>>>>> > conda create --name=mpl3dtest matplotlib ipython-notebook python=3.4 >>>>>> ... >>>>>> > activate mpl3dtest >>>>>> > ipython notebook >>>>>> > [test out 3d plotting] >>>>>> >>>>>> >>>>>> >>>>>> On Thu, Nov 13, 2014 at 12:44 PM, Geoffrey Mégardon < >>>>>> geo...@gm...> wrote: >>>>>> >>>>>>> I uninstall and reinstall Anaconda. >>>>>>> That still does not work :/ >>>>>>> Is it possible there is like OpenGL problem, graphic card driver >>>>>>> problem, or something linked to displaying 3d? >>>>>>> >>>>>>> On 13 November 2014 13:32, Paul Hobson <pmh...@gm...> wrote: >>>>>>> >>>>>>>> Does a fresh conda environment help? >>>>>>>> >>>>>>>> On Wed, Nov 12, 2014 at 5:38 PM, Geoffrey Mégardon < >>>>>>>> geo...@gm...> wrote: >>>>>>>> >>>>>>>>> Yes, I may forget to tell, but this code is 100% working, it work >>>>>>>>> on other installations I have. So the problem is not in the code. >>>>>>>>> >>>>>>>>> It is just that on my current laptop, I don't know why, this code, >>>>>>>>> which tries to display a 3d plot, leads to a crash. >>>>>>>>> Note that 2D plots work fine on their side. >>>>>>>>> >>>>>>>>> I have an other PC on windows 8.1, and everything work fine on it, >>>>>>>>> I installed the same Anaconda 64-bit version. >>>>>>>>> >>>>>>>>> So it is something to do with my environment, but it is not linked >>>>>>>>> to the OS itself, and it is linked with 3D displaying only I would say. >>>>>>>>> >>>>>>>>> Any idea? :) >>>>>>>>> >>>>>>>>> >>>>>>>>> On 12 November 2014 18:44, Jerzy Karczmarczuk < >>>>>>>>> jer...@un...> wrote: >>>>>>>>> >>>>>>>>>> >>>>>>>>>> Le 13/11/2014 00:13, Geoffrey Mégardon a écrit : >>>>>>>>>> >>>>>>>>>> ... >>>>>>>>>> >>>>>>>>>>> But to create the 3D axes, to draw in it, and then to show >>>>>>>>>>>> the figure, that crashes: >>>>>>>>>>>> from mpl_toolkits.mplot3d import axes3d >>>>>>>>>>>> import matplotlib >>>>>>>>>>>> matplotlib.use("agg") >>>>>>>>>>>> import matplotlib.pyplot as plt >>>>>>>>>>>> >>>>>>>>>>>> fig = plt.figure() >>>>>>>>>>>> ax = fig.add_subplot(111, projection='3d') >>>>>>>>>>>> X, Y, Z = axes3d.get_test_data(0.05) >>>>>>>>>>>> cset = ax.contour(X, Y, Z) >>>>>>>>>>>> ax.clabel(cset, fontsize=9, inline=1) >>>>>>>>>>>> >>>>>>>>>>>> plt.show() >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> Basically on iPython QT console I would get an error like: >>>>>>>>>>>> ""Kernel died, restarting"" >>>>>>>>>>>> >>>>>>>>>>> Perhaps it is your environment, not Matplotlib. >>>>>>>>>> A copy-paste of this program run without problems on my system. >>>>>>>>>> Anaconda 64 bits, IPython console (within Spyder). >>>>>>>>>> But *Windows 7*, not 8. >>>>>>>>>> >>>>>>>>>> Jerzy Karczmarczuk >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> ------------------------------------------------------------------------------ >>>>>>>>>> Comprehensive Server Monitoring with Site24x7. >>>>>>>>>> Monitor 10 servers for $9/Month. >>>>>>>>>> Get alerted through email, SMS, voice calls or mobile push >>>>>>>>>> notifications. >>>>>>>>>> Take corrective actions from your mobile device. >>>>>>>>>> >>>>>>>>>> http://pubads.g.doubleclick.net/gampad/clk?id=154624111&iu=/4140/ostg.clktrk >>>>>>>>>> _______________________________________________ >>>>>>>>>> Matplotlib-users mailing list >>>>>>>>>> Mat...@li... >>>>>>>>>> https://lists.sourceforge.net/lists/listinfo/matplotlib-users >>>>>>>>>> >>>>>>>>>> >>>>>>>>> >>>>>>>>> >>>>>>>>> -- >>>>>>>>> -- >>>>>>>>> MEGARDON Geoffrey >>>>>>>>> >>>>>>>>> >>>>>>>>> ------------------------------------------------------------------------------ >>>>>>>>> Comprehensive Server Monitoring with Site24x7. >>>>>>>>> Monitor 10 servers for $9/Month. >>>>>>>>> Get alerted through email, SMS, voice calls or mobile push >>>>>>>>> notifications. >>>>>>>>> Take corrective actions from your mobile device. >>>>>>>>> >>>>>>>>> http://pubads.g.doubleclick.net/gampad/clk?id=154624111&iu=/4140/ostg.clktrk >>>>>>>>> _______________________________________________ >>>>>>>>> Matplotlib-users mailing list >>>>>>>>> Mat...@li... >>>>>>>>> https://lists.sourceforge.net/lists/listinfo/matplotlib-users >>>>>>>>> >>>>>>>>> >>>>>>>> >>>>>>> >>>>>>> >>>>>>> -- >>>>>>> -- >>>>>>> MEGARDON Geoffrey >>>>>>> >>>>>> >>>>>> >>>>>> >>>>>> ------------------------------------------------------------------------------ >>>>>> Comprehensive Server Monitoring with Site24x7. >>>>>> Monitor 10 servers for $9/Month. >>>>>> Get alerted through email, SMS, voice calls or mobile push >>>>>> notifications. >>>>>> Take corrective actions from your mobile device. >>>>>> >>>>>> http://pubads.g.doubleclick.net/gampad/clk?id=154624111&iu=/4140/ostg.clktrk >>>>>> _______________________________________________ >>>>>> Matplotlib-users mailing list >>>>>> Mat...@li... >>>>>> https://lists.sourceforge.net/lists/listinfo/matplotlib-users >>>>>> >>>>>> >>>>> >>>> >>>> >>>> -- >>>> -- >>>> MEGARDON Geoffrey >>>> >>> >>> >> >> >> -- >> -- >> MEGARDON Geoffrey >> > > > > -- > -- > MEGARDON Geoffrey > -- -- MEGARDON Geoffrey |
