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From: Brian Z. <br...@gm...> - 2009-11-10 06:47:05
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I'm getting my Py2app build running and think I've worked around some issues, but another major one has come up. My application is being built on OS X 10.5.8, where matplotlib is, oviously, installed. On another 10.5.X machine without any of the app's dependencies, my compiled app runs just fine. Today, I tried getting it running on a new Mac with Snow Leopard, 10.6, and get the following bus error. >From the crash report, it looks like these are relevant: Exception Type: EXC_BAD_ACCESS (SIGBUS) Exception Codes: KERN_PROTECTION_FAILURE at 0x0000000000000000 Crashed Thread: 0 Dispatch queue: com.apple.main-thread Thread 0 Crashed: Dispatch queue: com.apple.main-thread 0 ??? 0000000000 0 + 0 1 libSystem.B.dylib 0x91176aa8 _Unwind_GetLanguageSpecificData + 24 2 libstdc++.6.dylib 0x90057d86 __gxx_personality_v0 + 120 3 libgcc_s.1.dylib 0x03801476 _Unwind_Backtrace + 278 4 libgcc_s.1.dylib 0x03801890 _Unwind_Resume + 112 5 ft2font.so 0x038cd3b1 FT2Font::FT2Font(std::string) + 3737 6 ft2font.so 0x038cd4df ft2font_module::new_ft2font(Py::Tuple const&) + 291 7 ft2font.so 0x038d787f Py::ExtensionModule<ft2font_module>::invoke_method_varargs(std::string const&, Py::Tuple const&) + 261 8 ft2font.so 0x038df637 method_varargs_call_handler + 301 I'm not really sure where to go from here. I've read a few other things which hint at Snow Leopard being a bit of a headache: http://bit.ly/2Z2Cil Has anyone run this setup before? Suggestions? BZ |
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From: Emanuele S. <ema...@gm...> - 2009-11-10 07:46:06
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We saw the same problem with VisTrails (www.vistrails.org). It seems that python.org's python can't build the fonts in ~/.matplotlib on snow leopard. We noticed that importing matplotlib.axis using Apple's python will do that. So this is the work-around we found for vistrails (bundled with python.org 2.5) In a terminal on snow leopard: $ rm -rf ~/.matplotlib $ cd /Applications/Vistrails.app/Contents/Resources/lib/python2.5 $ DYLD_LIBRARY_PATH=/usr/lib /System/Library/Frameworks/ Python.framework/Versions/2.5/bin/python >>> import matplotlib.axis Now running the app again works. The DYLD_LIBRARY_PATH is necessary because of problems we saw with different versions of libgcc_s.1.dylib present in the system and the wrong one was being loaded. I don't think it's a py2app bug because I can reproduce it by just running python.org's python and importing matplotlib.axis. I guess it is a bug in matplotlib. -- Emanuele. On Nov 9, 2009, at 11:46 PM, Brian Zambrano wrote: > I'm getting my Py2app build running and think I've worked around > some issues, but another major one has come up. My application is > being built on OS X 10.5.8, where matplotlib is, oviously, > installed. On another 10.5.X machine without any of the app's > dependencies, my compiled app runs just fine. Today, I tried > getting it running on a new Mac with Snow Leopard, 10.6, and get the > following bus error. > > From the crash report, it looks like these are relevant: > > Exception Type: EXC_BAD_ACCESS (SIGBUS) > Exception Codes: KERN_PROTECTION_FAILURE at 0x0000000000000000 > Crashed Thread: 0 Dispatch queue: com.apple.main-thread > > Thread 0 Crashed: Dispatch queue: com.apple.main-thread > 0 ??? 0000000000 0 + 0 > 1 libSystem.B.dylib 0x91176aa8 > _Unwind_GetLanguageSpecificData + 24 > 2 libstdc++.6.dylib 0x90057d86 > __gxx_personality_v0 + 120 > 3 libgcc_s.1.dylib 0x03801476 _Unwind_Backtrace > + 278 > 4 libgcc_s.1.dylib 0x03801890 _Unwind_Resume + > 112 > 5 ft2font.so 0x038cd3b1 FT2Font::FT2Font > (std::string) + 3737 > 6 ft2font.so 0x038cd4df > ft2font_module::new_ft2font(Py::Tuple const&) + 291 > 7 ft2font.so 0x038d787f > Py::ExtensionModule<ft2font_module>::invoke_method_varargs > (std::string const&, Py::Tuple const&) + 261 > 8 ft2font.so 0x038df637 > method_varargs_call_handler + 301 > > I'm not really sure where to go from here. I've read a few other > things which hint at Snow Leopard being a bit of a headache: http://bit.ly/2Z2Cil > > Has anyone run this setup before? Suggestions? > > BZ > > ------------------------------------------------------------------------------ > Let Crystal Reports handle the reporting - Free Crystal Reports 2008 > 30-Day > trial. Simplify your report design, integration and deployment - and > focus on > what you do best, core application coding. Discover what's new with > Crystal Reports now. http://p.sf.net/sfu/bobj-july_______________________________________________ > Matplotlib-users mailing list > Mat...@li... > https://lists.sourceforge.net/lists/listinfo/matplotlib-users |
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From: Brian Z. <br...@gm...> - 2009-11-10 16:44:06
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Following those steps, my app started just fine on Snow Leopard. Thank you
Emanuele!
I would, however, like to understand this problem a bit more so I can fix
the build. I'd like this app to run out of the box.
Looking at ft2font.so:
otool -L Resources/lib/python2.5/matplotlib/ft2font.so
Resources/lib/python2.5/matplotlib/ft2font.so:
@executable_path/../Frameworks/libfreetype.6.dylib (compatibility
version 10.0.0, current version 10.12.0)
/usr/lib/libz.1.dylib (compatibility version 1.0.0, current version
1.2.3)
/usr/lib/libstdc++.6.dylib (compatibility version 7.0.0, current
version 7.4.0)
/usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current
version 111.1.3)
@executable_path/../Frameworks/libgcc_s.1.dylib (compatibility
version 1.0.0, current version 1.0.0)
For matplotlib to load successfully, which libgcc should be loaded?
Thanks again,
BZ
On Mon, Nov 9, 2009 at 11:45 PM, Emanuele Santos
<ema...@gm...>wrote:
> We saw the same problem with VisTrails (www.vistrails.org).
>
> It seems that python.org's python can't build the fonts in ~/.matplotlib
> on snow leopard.
> We noticed that importing matplotlib.axis using Apple's python will do
> that.
>
> So this is the work-around we found for vistrails (bundled with python.org2.5)
>
> In a terminal on snow leopard:
>
> $ rm -rf ~/.matplotlib
> $ cd /Applications/Vistrails.app/Contents/Resources/lib/python2.5
> $ DYLD_LIBRARY_PATH=/usr/lib
> /System/Library/Frameworks/Python.framework/Versions/2.5/bin/python
>
> >>> import matplotlib.axis
>
> Now running the app again works.
>
> The DYLD_LIBRARY_PATH is necessary because of problems we saw with
> different versions of libgcc_s.1.dylib present in the system and the wrong
> one was being loaded.
>
> I don't think it's a py2app bug because I can reproduce it by just running
> python.org's python and importing matplotlib.axis.
>
> I guess it is a bug in matplotlib.
>
> -- Emanuele.
>
>
> On Nov 9, 2009, at 11:46 PM, Brian Zambrano wrote:
>
> I'm getting my Py2app build running and think I've worked around some
> issues, but another major one has come up. My application is being built on
> OS X 10.5.8, where matplotlib is, oviously, installed. On another 10.5.X
> machine without any of the app's dependencies, my compiled app runs just
> fine. Today, I tried getting it running on a new Mac with Snow Leopard,
> 10.6, and get the following bus error.
>
> From the crash report, it looks like these are relevant:
>
> Exception Type: EXC_BAD_ACCESS (SIGBUS)
> Exception Codes: KERN_PROTECTION_FAILURE at 0x0000000000000000
> Crashed Thread: 0 Dispatch queue: com.apple.main-thread
>
> Thread 0 Crashed: Dispatch queue: com.apple.main-thread
> 0 ??? 0000000000 0 + 0
> 1 libSystem.B.dylib 0x91176aa8
> _Unwind_GetLanguageSpecificData + 24
> 2 libstdc++.6.dylib 0x90057d86 __gxx_personality_v0 +
> 120
> 3 libgcc_s.1.dylib 0x03801476 _Unwind_Backtrace + 278
> 4 libgcc_s.1.dylib 0x03801890 _Unwind_Resume + 112
> 5 ft2font.so 0x038cd3b1
> FT2Font::FT2Font(std::string) + 3737
> 6 ft2font.so 0x038cd4df
> ft2font_module::new_ft2font(Py::Tuple const&) + 291
> 7 ft2font.so 0x038d787f
> Py::ExtensionModule<ft2font_module>::invoke_method_varargs(std::string
> const&, Py::Tuple const&) + 261
> 8 ft2font.so 0x038df637
> method_varargs_call_handler + 301
>
> I'm not really sure where to go from here. I've read a few other things
> which hint at Snow Leopard being a bit of a headache: http://bit.ly/2Z2Cil
>
> Has anyone run this setup before? Suggestions?
>
> BZ
>
>
> ------------------------------------------------------------------------------
> Let Crystal Reports handle the reporting - Free Crystal Reports 2008 30-Day
>
> trial. Simplify your report design, integration and deployment - and focus
> on
> what you do best, core application coding. Discover what's new with
> Crystal Reports now.
> http://p.sf.net/sfu/bobj-july_______________________________________________
> Matplotlib-users mailing list
> Mat...@li...
> https://lists.sourceforge.net/lists/listinfo/matplotlib-users
>
>
>
>
>
>
>
> ------------------------------------------------------------------------------
> Let Crystal Reports handle the reporting - Free Crystal Reports 2008 30-Day
> trial. Simplify your report design, integration and deployment - and focus
> on
> what you do best, core application coding. Discover what's new with
> Crystal Reports now. http://p.sf.net/sfu/bobj-july
> _______________________________________________
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> Mat...@li...
> https://lists.sourceforge.net/lists/listinfo/matplotlib-users
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From: Emanuele S. <ema...@gm...> - 2009-11-10 17:39:45
|
It should load /usr/lib/libgcc_s.1.dylib. The problem is that the binary package of matplotlib for mac is linked against /usr/local/lib/ libgcc_s.1.dylib. I tried using install_name_tool and change this on the bundle and it does the trick. $ cd Resources/lib/python2.5 install_name_tool -change @executable_path/../Frameworks/libgcc_s. 1.dylib /usr/lib/libgcc_s.1.dylib ft2font.so -- Emanuele. On Nov 10, 2009, at 9:43 AM, Brian Zambrano wrote: > Following those steps, my app started just fine on Snow Leopard. > Thank you Emanuele! > > I would, however, like to understand this problem a bit more so I > can fix the build. I'd like this app to run out of the box. > > Looking at ft2font.so: > > otool -L Resources/lib/python2.5/matplotlib/ft2font.so > Resources/lib/python2.5/matplotlib/ft2font.so: > @executable_path/../Frameworks/libfreetype.6.dylib > (compatibility version 10.0.0, current version 10.12.0) > /usr/lib/libz.1.dylib (compatibility version 1.0.0, current > version 1.2.3) > /usr/lib/libstdc++.6.dylib (compatibility version 7.0.0, > current version 7.4.0) > /usr/lib/libSystem.B.dylib (compatibility version 1.0.0, > current version 111.1.3) > @executable_path/../Frameworks/libgcc_s.1.dylib > (compatibility version 1.0.0, current version 1.0.0) > > For matplotlib to load successfully, which libgcc should be loaded? > > Thanks again, > BZ > > > > On Mon, Nov 9, 2009 at 11:45 PM, Emanuele Santos <ema...@gm... > > wrote: > We saw the same problem with VisTrails (www.vistrails.org). > > It seems that python.org's python can't build the fonts in > ~/.matplotlib on snow leopard. > We noticed that importing matplotlib.axis using Apple's python will > do that. > > So this is the work-around we found for vistrails (bundled with python.org > 2.5) > > In a terminal on snow leopard: > > $ rm -rf ~/.matplotlib > $ cd /Applications/Vistrails.app/Contents/Resources/lib/python2.5 > $ DYLD_LIBRARY_PATH=/usr/lib /System/Library/Frameworks/ > Python.framework/Versions/2.5/bin/python > > >>> import matplotlib.axis > > Now running the app again works. > > The DYLD_LIBRARY_PATH is necessary because of problems we saw with > different versions of libgcc_s.1.dylib present in the system and the > wrong one was being loaded. > > I don't think it's a py2app bug because I can reproduce it by just > running python.org's python and importing matplotlib.axis. > > I guess it is a bug in matplotlib. > > -- Emanuele. > > > On Nov 9, 2009, at 11:46 PM, Brian Zambrano wrote: > >> I'm getting my Py2app build running and think I've worked around >> some issues, but another major one has come up. My application is >> being built on OS X 10.5.8, where matplotlib is, oviously, >> installed. On another 10.5.X machine without any of the app's >> dependencies, my compiled app runs just fine. Today, I tried >> getting it running on a new Mac with Snow Leopard, 10.6, and get >> the following bus error. >> >> From the crash report, it looks like these are relevant: >> >> Exception Type: EXC_BAD_ACCESS (SIGBUS) >> Exception Codes: KERN_PROTECTION_FAILURE at 0x0000000000000000 >> Crashed Thread: 0 Dispatch queue: com.apple.main-thread >> >> Thread 0 Crashed: Dispatch queue: com.apple.main-thread >> 0 ??? 0000000000 0 + 0 >> 1 libSystem.B.dylib 0x91176aa8 >> _Unwind_GetLanguageSpecificData + 24 >> 2 libstdc++.6.dylib 0x90057d86 >> __gxx_personality_v0 + 120 >> 3 libgcc_s.1.dylib 0x03801476 >> _Unwind_Backtrace + 278 >> 4 libgcc_s.1.dylib 0x03801890 _Unwind_Resume + >> 112 >> 5 ft2font.so 0x038cd3b1 FT2Font::FT2Font >> (std::string) + 3737 >> 6 ft2font.so 0x038cd4df >> ft2font_module::new_ft2font(Py::Tuple const&) + 291 >> 7 ft2font.so 0x038d787f >> Py::ExtensionModule<ft2font_module>::invoke_method_varargs >> (std::string const&, Py::Tuple const&) + 261 >> 8 ft2font.so 0x038df637 >> method_varargs_call_handler + 301 >> >> I'm not really sure where to go from here. I've read a few other >> things which hint at Snow Leopard being a bit of a headache: http://bit.ly/2Z2Cil >> >> Has anyone run this setup before? Suggestions? >> >> BZ >> >> ------------------------------------------------------------------------------ >> Let Crystal Reports handle the reporting - Free Crystal Reports >> 2008 30-Day >> trial. Simplify your report design, integration and deployment - >> and focus on >> what you do best, core application coding. Discover what's new with >> Crystal Reports now. http://p.sf.net/sfu/bobj-july_______________________________________________ >> Matplotlib-users mailing list >> Mat...@li... >> https://lists.sourceforge.net/lists/listinfo/matplotlib-users > > > > > > > ------------------------------------------------------------------------------ > Let Crystal Reports handle the reporting - Free Crystal Reports 2008 > 30-Day > trial. Simplify your report design, integration and deployment - and > focus on > what you do best, core application coding. Discover what's new with > Crystal Reports now. http://p.sf.net/sfu/bobj-july > _______________________________________________ > Matplotlib-users mailing list > Mat...@li... > https://lists.sourceforge.net/lists/listinfo/matplotlib-users > > > ------------------------------------------------------------------------------ > Let Crystal Reports handle the reporting - Free Crystal Reports 2008 > 30-Day > trial. Simplify your report design, integration and deployment - and > focus on > what you do best, core application coding. Discover what's new with > Crystal Reports now. http://p.sf.net/sfu/bobj-july_______________________________________________ > Matplotlib-users mailing list > Mat...@li... > https://lists.sourceforge.net/lists/listinfo/matplotlib-users -- Emanuele. |
|
From: Christopher B. <Chr...@no...> - 2009-11-10 18:12:49
|
Emanuele Santos wrote: > It should load /usr/lib/libgcc_s.1.dylib. The problem is that the binary > package of matplotlib for mac is linked > against /usr/local/lib/libgcc_s.1.dylib. ouch -- it shouldn't be. Did you build it yourself or is that the "official" one? Also, it seems that Py2app really should include libs that are in /usr/local with the bundle, so that may be a py2app bug/feature. Boy, this is a pain! oh well, -Chris -- Christopher Barker, Ph.D. Oceanographer Emergency Response Division NOAA/NOS/OR&R (206) 526-6959 voice 7600 Sand Point Way NE (206) 526-6329 fax Seattle, WA 98115 (206) 526-6317 main reception Chr...@no... |
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From: Emanuele S. <ema...@gm...> - 2009-11-10 19:26:32
|
Hi, Chris I think it is the official one (0.98.5). I didn't try the latest version but I can check if this is still true. -- Emanuele. On Nov 10, 2009, at 11:14 AM, Christopher Barker wrote: > Emanuele Santos wrote: >> It should load /usr/lib/libgcc_s.1.dylib. The problem is that the >> binary >> package of matplotlib for mac is linked >> against /usr/local/lib/libgcc_s.1.dylib. > > ouch -- it shouldn't be. Did you build it yourself or is that the > "official" one? > > Also, it seems that Py2app really should include libs that are in > /usr/local with the bundle, so that may be a py2app bug/feature. > > Boy, this is a pain! > > oh well, > > -Chris > > > -- > Christopher Barker, Ph.D. > Oceanographer > > Emergency Response Division > NOAA/NOS/OR&R (206) 526-6959 voice > 7600 Sand Point Way NE (206) 526-6329 fax > Seattle, WA 98115 (206) 526-6317 main reception > > Chr...@no... > > ------------------------------------------------------------------------------ > Let Crystal Reports handle the reporting - Free Crystal Reports 2008 > 30-Day > trial. Simplify your report design, integration and deployment - and > focus on > what you do best, core application coding. Discover what's new with > Crystal Reports now. http://p.sf.net/sfu/bobj-july > _______________________________________________ > Matplotlib-users mailing list > Mat...@li... > https://lists.sourceforge.net/lists/listinfo/matplotlib-users -- Emanuele. |
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From: John H. <jd...@gm...> - 2009-11-10 19:57:59
|
On Tue, Nov 10, 2009 at 1:26 PM, Emanuele Santos <ema...@gm...> wrote: > Hi, Chris > > I think it is the official one (0.98.5). > I didn't try the latest version but I can check if this is still true. Could you please -- there were some bugs in linking on the OSX binaries that were fixed between 0.98.5 and 0.99.1 so I'd like to confirm that this was fixes as well |
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From: Brian Z. <br...@gm...> - 2009-11-10 20:32:50
|
FWIW, I'm using the official 0.98.5. Looking at the app bundle, all of the matplotlib .so files are linking against: @executable_path/../Frameworks/libgcc_s.1.dylib ...*except* matplotlib/backends/_macosx.so which is linking against: /usr/lib/libgcc_s.1.dylib So, I didn't see any looking in /usr/local/lib. BZ On Tue, Nov 10, 2009 at 11:57 AM, John Hunter <jd...@gm...> wrote: > On Tue, Nov 10, 2009 at 1:26 PM, Emanuele Santos > <ema...@gm...> wrote: > > Hi, Chris > > > > I think it is the official one (0.98.5). > > I didn't try the latest version but I can check if this is still true. > > Could you please -- there were some bugs in linking on the OSX > binaries that were fixed between 0.98.5 and 0.99.1 so I'd like to > confirm that this was fixes as well > > |
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From: Emanuele S. <ema...@gm...> - 2009-11-10 21:38:44
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I > On Tue, Nov 10, 2009 at 11:57 AM, John Hunter <jd...@gm...> > wrote: > On Tue, Nov 10, 2009 at 1:26 PM, Emanuele Santos > <ema...@gm...> wrote: > > Hi, Chris > > > > I think it is the official one (0.98.5). > > I didn't try the latest version but I can check if this is still > true. > > Could you please -- there were some bugs in linking on the OSX > binaries that were fixed between 0.98.5 and 0.99.1 so I'd like to > confirm that this was fixes as well > I just checked and it seems to be fixed in 0.99.1. -- Emanuele. > ------------------------------------------------------------------------------ > Let Crystal Reports handle the reporting - Free Crystal Reports 2008 > 30-Day > trial. Simplify your report design, integration and deployment - and > focus on > what you do best, core application coding. Discover what's new with > Crystal Reports now. http://p.sf.net/sfu/bobj-july_______________________________________________ > Matplotlib-users mailing list > Mat...@li... > https://lists.sourceforge.net/lists/listinfo/matplotlib-users |
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From: Brian Z. <br...@gm...> - 2009-11-11 07:44:23
|
I just upgraded to 0.99.1 and it's working perfectly now. I was previously hacking _png.so with install_name_tool, and that's not necessary anymore as well. Thank you to Emanuele and everyone else...much appreciated! BZ On Tue, Nov 10, 2009 at 1:38 PM, Emanuele Santos <ema...@gm...>wrote: > On Tue, Nov 10, 2009 at 11:57 AM, John Hunter <jd...@gm...> wrote: > >> On Tue, Nov 10, 2009 at 1:26 PM, Emanuele Santos >> <ema...@gm...> wrote: >> > Hi, Chris >> > >> > I think it is the official one (0.98.5). >> > I didn't try the latest version but I can check if this is still true. >> >> Could you please -- there were some bugs in linking on the OSX >> binaries that were fixed between 0.98.5 and 0.99.1 so I'd like to >> confirm that this was fixes as well >> >> > I just checked and it seems to be fixed in 0.99.1. > > -- Emanuele. > > > |
