Re: [maq-help] "Inconsistent sequence name" error

[Raymond W. <r-...@cb...>]

Hi Peter,

Thank you for suggestion; yes, that worked ... none of the 
reads are giving this error anymore.  Thank you!

Ray


On 04/04/11 18:01, Peter wrote:
> On Mon, Apr 4, 2011 at 7:00 AM, Raymond Wan<r-...@cb...>  wrote:
>> I get this warning:
>>
>> [seq_read_fastq] Inconsistent sequence name:
>> @#####!!!!!!!!#######. Continue anyway.
>> -- finish writing file 'test.bfq'
>> -- 2 sequences were loaded.
...
> Hi,
>
> I would try leaving the plus line empty, it saves space and should
> avoid whatever issue this parser has comparing the two:
>
> @test.1 HWUSI-EAS574_104864611:6:1:1018:12910 length=100
> NATCCAAGCTAACTAGGATCCTTCTCTGGAAAATGACTCTTNNNNNNAGTATTGTCTCTTTGTCTNNTTCTATTCAAAGTCAGAANNNNNNNNTGGAAAG
> +
> !5555;<<;;EEE;EEEE>?BBBB>EEEEEEEEEEEE<BE,!!!!!!)/02).1.BBB<B33527!!12255635?>?@@#####!!!!!!!!#######
> @test.2 HWUSI-EAS574_104864611:6:1:1018:6895 length=100
> NAACTTTTGTTATTTATTAGGCAATGATACGGATTTTTTCANNNNNNTTAGTTCTTTTCCTTTTTNNTAGAATGAAATTTCCTCTNNNNNNNNAATATTG
> +
> !########################################!!!!!!##################!!##################!!!!!!!!#######