Re: [maq-help] Sol2Sanger filters

[Olivier H. <oh...@sc...>]

Thanks Heng, I will double check that.
I have another question regarding the dump file from maq map : what  
is the number after the read name ? Is it the number of mismatches,  
the number of repeats ? What does 99 means ? I am trying to rescue  
those reads.

Thanks for your answer


Olivier


On Dec 6, 2007, at 12:40 PM, Heng Li wrote:

> Hello Olivier,
>
> Thanks for the feedback. If maq ran properly, no read would be  
> discarded. Maybe this was because maq got killed by chance, or the  
> input format was not correct?
>
> regards,
>
> Heng
>
>
> On 6 Dec 2007, at 18:50, Olivier Harismendy wrote:
>
>> Hi
>>
>> I noticed that maq sol2sanger conversion get rid of some of my  
>> reads (around 15%). Any explanation ?
>>
>> Thanks
>>
>> Olivier
>>
>>
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