Re: [Mapass-help] The new function sol2sanger seems not valid

[Liu T. <ltn...@16...>]

  Oh, I see. Maybe my file is done with some unknown operation.
 And now I have another question:
 If I have a fastq file which I don't know where it come
 from, how can I know which kind of fastq it belongs to?
 Is there a way to check the format of fastq=A3=BF
 =20
=D4=DA2007-06-18=A3=AC"Heng Li" <lh...@gm...> =D0=B4=B5=C0=A3=BA
Hi, What are the read sequences you got from Solexa pipeline? So far as I k=
now, the s_?_sequence.txt is also a fastq file. The only difference is in t=
his file, qualities are scaled different from mapass' fastq. Actually, I ha=
ve never seen a file formated in that way. The correct file should be: @USI=
-EAS6_2:2:1:611:882 GTAAAACGACGGCCAGTTTTGTGTATCATAGAT + ???>,04?.???+(somet=
hing similar.) FASTQ is the standard input file format for several assemble=
rs. Heng On 18 Jun 2007, at 07:03, Liu Tao wrote: > > Hi, Heng: > > I just =
found the new release of mapass2 (0.4.1) and try to use > the new feature >=
 to covert the s_2_sequence.txt to sanger fastq. But the result > file is e=
mpty without > any error report. Do I use the correct format of s_2_sequenc=
e.txt? > One line in the > file is list in the following: > > USI-EAS6_2:2:=
1:611:882:GTAAAACGACGGCCAGTTTTGTGTATCATAGAT:40 40 40 > 39 11 15 19 40 13 40=
 40 40 10 16 7 34 9 23 28 29 22 15 27 18 4 23 6 > 1 12 1 7 -2 10 > > Is it =
the same with your request format? > > Best Regards! > Liu Tao. > > > > > 1=
50 =CD=F2 =C8=CB =CD=AC =CA=B1 =D4=DA =CD=E6 =B5=C4 =CD=F8 =D3=CE=A3=AC=C4=
=E3 =B2=BB =CA=D4 =CA=D4 =C2=F0 =A3=BF > ----------------------------------=
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