[mamba-help] MAMBA --grep command and Exon info fila help

[Nicolas L. O. <nic...@un...>]

Dear David,


I am using your nice tool MAMBA to do ASE analysis after using GATK ASEReadCount and also counts obtained in phASER. My idea is to compare these 2 data sets, and select (extract) alleles significant imbalanced from 2 different tissues, in 3 different time of development some fishes.

I basically have a similar question to others post in the help list, about what to use in the column Exon info when this is “unknown"?
I tried several things but always have the same error. Then, also could you explain me (or indicate where to look at), to understand which the —grep command can be used, for me is not clear.

Thanks in advance,

Regards,

Nicolás Lichilín




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Nicolás Lichilín Ortiz
University of Basel
Zoological Institute
Vesalgasse 1
CH-4051 Basel
Switzerland