[mamba-help] MAMBA ASE usage

[Ernst T. <Ern...@cr...>]

Dear MAMBA devs,

I'm running some comparative ASE experiment, and I've seem to run into some
troubles with the usage of the MAMBA ASE module.

The example usage does not clearly state the usage of ASE module, and more
importanlty, the required input format or parameters, is there a manual
available ?   I only found the R data from Matti Pirinen's Software

I've tried different parameters, but the only feedback from the software is
: ImportError: ..anaconda2/lib/libreadline.so.6: undefined symbol: PC

My question concerns the usage of GATKs ASEreadcounter output formats. GATK
references your software suit for downstream analysis. Are there conversion
specifcations ?


One minor comments:
your installation instructions on setuptools can be replaced with  :
easy_install setuptools
the current instructions produce the error below:

Best wishes,
Ernst




export MAMBA=/home/ethur/anaconda2/bin/;

export
PYTHONPATH=/home/ethur/anaconda2/lib/python2.7/site-packages/:${PYTHONPATH};


sh setuptools-0.6c11-py2.7.egg --install-dir=$MAMBA;

You are attempting to install a package to a directory that is not
on PYTHONPATH and which Python does not read ".pth" files from.  The
installation directory you specified (via --install-dir, --prefix, or
the distutils default setting) was:

    /home/ethur/anaconda2/bin/

and your PYTHONPATH environment variable currently contains:

    '/home/ethur/anaconda2/lib/python2.7/site-packages/:'