[mamba-help] grep options
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From: ASCIA E. <as...@uc...> - 2016-09-20 02:08:03
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Hi, I am using mamba with output from GATK ASEReadCounter. I don't know the Exon Info. I was trying to run the software, but was having errors due to the grep command. If I make the Exon Info "SEVERE_IMPACT=STOP_GAINED" and use the grep command in the example --grep ">,0,=STOP_GAINED|DFGFDG" it works. What grep command should I use for "Unkown"? Or is it ok to leave the exon information as is? (more sever than it actually might be.) Does it affect the output? Best, Ascia |