Re: [Lsid-developer] "No acceptable metadata format"

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I am using version 1.1.2 of the toolkit which appears to be the most 
recent. I am not using the client package, I have adapted 
TestClient.java from the com.ibm.lsid.server.impl.test package for my 
needs. But still, I'm calling the same server classes as 
LSIDTestClient....so why don't I seem to be getting this new functionality?

Thanks
Dan

Benjamin H Szekely wrote:
>
> Hey Dan,
>    Are you using the latest version of the LSID java client ?  The 
> newest version sets the proper metadata type.
>
> - Ben
>
> Ben Szekely
> IBM Software Engineer
> Advanced Internet Technology, Cambridge, MA
> bhs...@us...
>
> lsi...@li... wrote on 11/02/2006 
> 08:26:55 PM:
>
> > I figured this out. If anyone is interested, this is what I did:
> >             String[] formats = new String[1];
> >             formats[0] = "application/rdf+xml";
> >             MetadataResponse metadata = resolver.getMetadata(formats);
> >
> > You can also set formats to null to indicate you don't care about the
> > return format. Still, there is a bit of a chicken and egg problem here
> > because I don't really know the return format until the
> > resolver.getMetadata() call has returned. So really I have to set
> > formats to null, call getMetadata(), call getFormat() on the result to
> > see if I know what to do with the format, and if I do, download the 
> data.
> >
> >
> > Dan Tenenbaum wrote:
> > > Hi,
> > >
> > > If I hit this LSID:
> > >
> > > urn:lsid:ncbi.nlm.nih.gov.lsid.biopathways.org:genbank:bx247883
> > >
> > > ...in the Firefox plugin, I can view and save both the data and 
> metadata.
> > >
> > > I am writing a simple little client in Java and that client can 
> read the
> > > data from this same LSID, but when I try and read the metadata, I 
> get :
> > >
> > > com.ibm.lsid.LSIDException: 401 : No acceptable metadata format
> > > com.ibm.lsid.server.LSIDServerException: 401 : No acceptable 
> metadata format
> > > (full stack trace below)
> > >
> > > Here is the relevant code from my client:
> > >             LSID lsid = new
> > > 
> LSID("urn:lsid:ncbi.nlm.nih.gov.lsid.biopathways.org:genbank:bx247883");
> > >             LSIDResolver resolver = getLSIDResolver(lsid);
> > >             MetadataResponse metadata = resolver.getMetadata(); // 
> this
> > > line throws the exception
> > >              // here's the code to get the metadata stream and 
> display it...
> > >
> > > What is going on and how do I fix it?
> > >
> > > Thanks
> > > Dan
> > >
> > >
> > >
> > > com.ibm.lsid.LSIDException: 401 : No acceptable metadata format
> > > com.ibm.lsid.server.LSIDServerException: 401 : No acceptable 
> metadata format
> > >     at
> > > com.ibm.lsid.server.impl.SimpleResolutionService.
> > checkFormats(SimpleResolutionService.java:117)
> > >     at
> > > 
> com.ibm.lsid.server.impl.ncbi.NCBIResolutionService.doGetMetadata(Unknown
> > > Source)
> > >     at
> > > com.ibm.lsid.server.impl.SimpleResolutionService.
> > getMetadata(SimpleResolutionService.java:266)
> > >     at
> > > com.ibm.lsid.server.impl.CachingMetadataService.
> > getMetadata(CachingMetadataService.java:56)
> > >     at
> > > com.ibm.lsid.server.servlet.MetadataServlet.
> > processGet(MetadataServlet.java:102)
> > >     at 
> com.ibm.lsid.server.servlet.BaseServlet.doGet(BaseServlet.java:175)
> > >     at javax.servlet.http.HttpServlet.service(HttpServlet.java:689)
> > >     at javax.servlet.http.HttpServlet.service(HttpServlet.java:802)
> > >     at
> > > org.apache.catalina.core.ApplicationFilterChain.
> > internalDoFilter(ApplicationFilterChain.java:252)
> > >     at
> > > org.apache.catalina.core.ApplicationFilterChain.
> > doFilter(ApplicationFilterChain.java:173)
> > >     at
> > > org.apache.catalina.core.StandardWrapperValve.
> > invoke(StandardWrapperValve.java:213)
> > >     at
> > > org.apache.catalina.core.StandardContextValve.
> > invoke(StandardContextValve.java:178)
> > >     at
> > > org.apache.catalina.core.StandardHostValve.
> > invoke(StandardHostValve.java:126)
> > >     at
> > > org.apache.catalina.valves.ErrorReportValve.
> > invoke(ErrorReportValve.java:105)
> > >     at
> > > org.apache.catalina.core.StandardEngineValve.
> > invoke(StandardEngineValve.java:107)
> > >     at
> > > 
> org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:148)
> > >     at
> > > 
> org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:869)
> > >     at
> > > org.apache.coyote.http11.
> > Http11BaseProtocol$Http11ConnectionHandler.
> > processConnection(Http11BaseProtocol.java:667)
> > >     at
> > > org.apache.tomcat.util.net.PoolTcpEndpoint.
> > processSocket(PoolTcpEndpoint.java:527)
> > >     at
> > > org.apache.tomcat.util.net.LeaderFollowerWorkerThread.
> > runIt(LeaderFollowerWorkerThread.java:80)
> > >     at
> > > org.apache.tomcat.util.threads.ThreadPool$ControlRunnable.
> > run(ThreadPool.java:684)
> > >     at java.lang.Thread.run(Thread.java:788)
> > > printStackTrace(pw): com.ibm.lsid.server.LSIDServerException
> > >
> > >     at com.ibm.lsid.http.HTTPUtils.doGet(HTTPUtils.java:142)
> > >     at
> > > 
> com.ibm.lsid.client.LSIDResolver.getMetadataFromPort(LSIDResolver.java:679)
> > >     at 
> com.ibm.lsid.client.LSIDResolver.getMetadata(LSIDResolver.java:553)
> > >     at 
> com.ibm.lsid.client.LSIDResolver.getMetadata(LSIDResolver.java:493)
> > >     at
> > > org.systemsbiology.compcore.lsidclient.SimpleClient.
> > main(SimpleClient.java:44)
> > >     at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
> > >     at
> > > sun.reflect.NativeMethodAccessorImpl.
> > invoke(NativeMethodAccessorImpl.java:39)
> > >     at
> > > sun.reflect.DelegatingMethodAccessorImpl.
> > invoke(DelegatingMethodAccessorImpl.java:25)
> > >     at java.lang.reflect.Method.invoke(Method.java:585)
> > >     at 
> com.intellij.rt.execution.application.AppMain.main(AppMain.java:90)
> > > printStackTrace(ps): com.ibm.lsid.LSIDException
> > >
> > >
> > > 
> -------------------------------------------------------------------------
> > > Using Tomcat but need to do more? Need to support web services, 
> security?
> > > Get stuff done quickly with pre-integrated technology to make 
> yourjob easier
> > > Download IBM WebSphere Application Server v.1.0.1 based on Apache 
> Geronimo
> > > 
> http://sel.as-us.falkag.net/sel?cmd=lnk&kid=120709&bid=263057&dat=121642
> > > _______________________________________________
> > > Lsid-developer mailing list
> > > Lsi...@li...
> > > https://lists.sourceforge.net/lists/listinfo/lsid-developer
> > >  
> >
> >
> > 
> -------------------------------------------------------------------------
> > Using Tomcat but need to do more? Need to support web services, 
> security?
> > Get stuff done quickly with pre-integrated technology to make your 
> job easier
> > Download IBM WebSphere Application Server v.1.0.1 based on Apache 
> Geronimo
> > http://sel.as-us.falkag.net/sel?cmd=lnk&kid=120709&bid=263057&dat=121642
> > _______________________________________________
> > Lsid-developer mailing list
> > Lsi...@li...
> > https://lists.sourceforge.net/lists/listinfo/lsid-developer
> ------------------------------------------------------------------------
>
> -------------------------------------------------------------------------
> Using Tomcat but need to do more? Need to support web services, security?
> Get stuff done quickly with pre-integrated technology to make your job easier
> Download IBM WebSphere Application Server v.1.0.1 based on Apache Geronimo
> http://sel.as-us.falkag.net/sel?cmd=lnk&kid=120709&bid=263057&dat=121642
> ------------------------------------------------------------------------
>
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