Re: [Ldhat-help] lookup table

[Yogendra K. <ykh...@gm...>]

Hi,
I want to calculate rate of recombination and recombination hot spot using
LDhat.
I have SNP genotyping data for 400 line with >2000 markers.
which look up table should I used? Do I need to generate new? How can I
generate new look up table?
I am new to this analysis. Please help me.


On Fri, Nov 29, 2013 at 2:59 PM, Yogendra Khedikar <ykh...@gm...>wrote:

> Hi,
> I want to calculate rate of recombination and recombination hot spot using
> LDhat.
> I have SNP genotyping data for 400 line with >2000 markers.
> which look up table should I used? Do I need to generate new? How can I
> generate new look up table?
> I am new to this analysis. Please help me.
>
>
> --
> Thanks and kind regards,
> Yogendra P Khedikar
>
>



-- 
Thanks and kind regards,
Yogendra P Khedikar