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Changed respiration

Added dynamic_density for stem
Changed stem Psk_base to fixed value instead of using phloem conductance function (needs further investigation)
Correction to stem storage, needs also to be checked for sometimes storage goes negative

dasilvadavid 2012-02-15

changed /trunk/PythonScripts/graphFiles.py
changed /trunk/PythonScripts/respiration.py
changed /trunk/PythonScripts/rgr.py
changed /trunk/functions.cpp
changed /trunk/functions.hpp
changed /trunk/leaf.cpp
changed /trunk/lsystem.l
changed /trunk/parameters.ini
changed /trunk/types.cpp
/trunk/PythonScripts/graphFiles.py Diff Switch to side-by-side view
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/trunk/PythonScripts/respiration.py Diff Switch to side-by-side view
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/trunk/PythonScripts/rgr.py Diff Switch to side-by-side view
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/trunk/functions.cpp Diff Switch to side-by-side view
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/trunk/functions.hpp Diff Switch to side-by-side view
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/trunk/leaf.cpp Diff Switch to side-by-side view
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/trunk/lsystem.l Diff Switch to side-by-side view
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/trunk/parameters.ini Diff Switch to side-by-side view
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/trunk/types.cpp Diff Switch to side-by-side view
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