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Re: [Laika-talk] UMLS database
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From: Ken D. <ke...@me...> - 2008-09-03 18:43:14
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<HTML> <HEAD> <META content="text/html; charset=utf-8" http-equiv=Content-Type> <META content="OPENWEBMAIL" name=GENERATOR> </HEAD> <BODY bgColor=#ffffff> <font size="2">Hello Laika team, <br /> <br /> Just a quick hijack: I too would be very interested in a process to check the UMLS functionality on my Linux Laika server. I have had it all installed and setup for quite some time, but it would be nice to have a few steps I could run through to validate that my validator is using the UMLS data that takes up so much room. <br /> <br />-Thanks <br /> <br /> <br />Kenneth M Dechick <br />Linux Systems Administrator <br />Community Computer Service, Inc. <br />(315)-255-0900 ext154 <br />http://www.medent.com <br />ke...@me... <br />-- -- -- -- -- -- -- -- -- -- -- <br /> "If entropy is increasing, where is it coming from??" -Unknown <br /> <br />. <center><img src="http://www.medent.com/index_images/index1.jpg" /></center> <br /> <br /><b>---------- Original Message -----------</b> <br /> From: "Earl Evans" <ee...@cc...> <br /> To: "Robert McCready" <rmc...@mi...> <br /> Cc: ta...@pr... <br /> Sent: Wed, 3 Sep 2008 13:33:54 -0500 <br /> Subject: Re: [Laika-talk] UMLS database <br /> <br />> <span style="font-size: 11pt; font-family: "Calibri","sans-serif"; color: rgb(31, 73, 125);">Hi Rob,<o:p /></span> <br />> <span style="font-size: 11pt; font-family: "Calibri","sans-serif"; color: rgb(31, 73, 125);"><o:p> </o:p></span> <br />> <span style="font-size: 11pt; font-family: "Calibri","sans-serif"; color: rgb(31, 73, 125);">We now have the UMLS database loaded into MySQL on our Laika Linux server.<o:p /></span> <br />> <span style="font-size: 11pt; font-family: "Calibri","sans-serif"; color: rgb(31, 73, 125);"><o:p> </o:p></span> <br />> <span style="font-size: 11pt; font-family: "Calibri","sans-serif"; color: rgb(31, 73, 125);">I have looked at the file that Rob Dingwell referenced, and it’s not clear to me what parts need to be altered/uncommented. Would it be possible to set up a meeting for us to walk through the activation and test of the UMLS functionality?<o:p /></span> <br />> <span style="font-size: 11pt; font-family: "Calibri","sans-serif"; color: rgb(31, 73, 125);"><o:p> </o:p></span> <br />> <span style="font-size: 11pt; font-family: "Calibri","sans-serif"; color: rgb(31, 73, 125);">Thanks,<o:p /></span> <br />> <span style="font-size: 11pt; font-family: "Calibri","sans-serif"; color: rgb(31, 73, 125);"><o:p> </o:p></span> <br />> <span style="font-size: 11pt; font-family: "Calibri","sans-serif"; color: rgb(31, 73, 125);">- Earl<o:p /></span> <br />> <span style="font-size: 11pt; font-family: "Calibri","sans-serif"; color: rgb(31, 73, 125);"><o:p> </o:p></span> <br />> <span style="font-size: 11pt; font-family: "Calibri","sans-serif"; color: rgb(31, 73, 125);">Earl Evans<o:p /></span> <br />> <span style="font-size: 11pt; font-family: "Calibri","sans-serif"; color: rgb(31, 73, 125);">IT Services, CCHIT<o:p /></span> <br />> <span style="font-size: 11pt; font-family: "Calibri","sans-serif"; color: rgb(31, 73, 125);">Certification Commission for Healthcare Information Technology<o:p /></span> <br />> <span style="font-size: 11pt; font-family: "Calibri","sans-serif"; color: rgb(31, 73, 125);">503.840.5729<o:p /></span> <br />> <span style="font-size: 11pt; font-family: "Calibri","sans-serif"; color: rgb(31, 73, 125);">ee...@cc...<o:p /></span> <br />> <span style="font-size: 11pt; font-family: "Calibri","sans-serif"; color: rgb(31, 73, 125);"><o:p> </o:p></span> <br />> <span style="font-size: 11pt; font-family: "Calibri","sans-serif"; color: rgb(31, 73, 125);"><o:p> </o:p></span> <br />> <span style="font-size: 11pt; font-family: "Calibri","sans-serif"; color: rgb(31, 73, 125);"><o:p> </o:p></span> <br />> <span style="font-size: 11pt; font-family: "Calibri","sans-serif"; color: rgb(31, 73, 125);"><o:p> </o:p></span> <br />> <br />> <b><span style="font-size: 10pt; font-family: "Tahoma","sans-serif";">From:</span></b><span style="font-size: 10pt; font-family: "Tahoma","sans-serif";"> Dingwell, Robert A. (BOBD) [mailto:bo...@mi...] <br />> <b>Sent:</b> Tuesday, August 26, 2008 10:24 AM <br />> <b>To:</b> Robert McCready; ta...@pr... <br />> <b>Cc:</b> Earl Evans <br />> <b>Subject:</b> Re: [Laika-talk] UMLS database<o:p /></span> <br />> <o:p> </o:p> <br />> <span style="font-size: 11pt; font-family: "Calibri","sans-serif";">This is not a matter of just putting the UMLS data files somewhere on the system but actually installing the UMLS system in a MySQL database. NLM provides a tool called MetamorphoSys which can generate the MySQL load scripts, the scripts then need to be executed, this will take day+ to perform. Once installed the the validator can be configured by uncommenting the umls sections in the laika-data.xml file located in the WEB-INF directory and setting the correct database parameters in the same file. <br />> <br />> Rob <br />> <br />> On 8/25/08 4:07 PM, "Robert McCready" <rmc...@mi...> wrote:</span><o:p /> <br />> <span style="font-size: 11pt; font-family: "Calibri","sans-serif";">Rob D, <br />> <br />> I 99% certain this a configuration setting in the CCD/C32 validator only, but wanted to vet this past you first. If correct, could you point out which file/setting in the expanded .war file Earl should edit? <br />> <br />> --- <br />> Rob McC. <br />> <br />> On 8/25/08 4:00 PM, "Earl Evans" <ee...@cc...> wrote:</span><o:p /> <br />> <span style="font-size: 11pt; font-family: "Calibri","sans-serif";">Hi Rob, <br />> <br />> I am uploading the UMLS database to our Laika server. Can you tell me where the files need to go in order for Laika to automatically use the UMLS databases for validation? <br />> <br />> Thanks, <br />> <br />> - Earl <br />> <br />> </span><o:p /> <br />> <span style="font-size: 11pt; font-family: "Calibri","sans-serif";"><o:p> </o:p></span> <br />> <span style="font-size: 11pt; font-family: "Calibri","sans-serif";"> <hr align="center" width="95%" size="3" /> </span> <br />> <span style="font-size: 10pt; font-family: Consolas;">------------------------------------------------------------------------- <br />> This SF.Net email is sponsored by the Moblin Your Move Developer's challenge <br />> Build the coolest Linux based applications with Moblin SDK & win great prizes <br />> Grand prize is a trip for two to an Open Source event anywhere in the world <br />> <a href="http://moblin-contest.org/redirect.php?banner_id=100&url=/">http://moblin-contest.org/redirect.php?banner_id=100&url=/</a><o:p /></span> <br />> <span style="font-size: 10pt; font-family: Consolas;"> <hr align="center" width="95%" size="3" /> </span> <br />> <span style="font-size: 10pt; font-family: Consolas;">_______________________________________________ <br />> laika-talk mailing list <br />> lai...@li... <br />> https://lists.sourceforge.net/lists/listinfo/laika-talk</span><o:p /> <br /><b>------- End of Original Message -------</b> <br /> </font> </BODY> </HTML> This message has been scanned for viruses and dangerous content by MailScanner & ClamAV. <BR> <BR> This message and any attachments may contain information that is protected by law as privileged and <BR> confidential, and is transmitted for the sole use of the intended recipient(s). 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