kSNP Discussion

kSNP4 does SNP discovery and SNP annotation from whole genomes

Brought to you by: barryghall, shea0

General Discussion

Forum about anything you want to talk about.

Topic	Posts	Views	Last Post
Early termination in step (2/10) By pmhgrt on Thu Dec 07, 2023 10:41 AM	6	320	By hansen wang on Thu Sep 26, 2024 12:42 PM
error when executing kSNP4 By hansen wang on Thu Sep 26, 2024 12:29 PM	1	103	By hansen wang on Thu Sep 26, 2024 12:29 PM
redirect output for FilteredKmersCache By James Doonan on Fri Sep 06, 2024 07:49 AM	2	92	By Barry G. Hall on Fri Sep 06, 2024 07:10 PM
Error when Placing SNPs on nodes SNPs_all tree By Eric Fournier on Mon Sep 25, 2023 11:00 PM	2	163	By Kenny OBERLE on Mon Mar 11, 2024 12:36 PM
short raw read data By Rita on Thu Mar 07, 2024 08:50 PM	1	85	By Rita on Thu Mar 07, 2024 08:50 PM
kSNP FilteredKmerCache By wenao hu on Mon Nov 13, 2023 02:55 AM	3	94	By wenao hu on Mon Nov 13, 2023 04:24 AM
Error while running kSNP4 By Abed Kurdi on Fri Aug 18, 2023 09:41 AM	5	655	By Eric Fournier on Wed Sep 27, 2023 03:57 PM
Unable to annotate SNP using both kSNP3/kSNP4 By Brad Yang on Wed May 31, 2023 10:01 PM	2	133	By Barry G. Hall on Mon Jun 05, 2023 12:08 AM
cannot get ksnp3 to complete TOO FEW SPECIES By Theodore Allnutt on Wed May 18, 2016 02:30 AM	8	1683	By Barry G. Hall on Wed Mar 01, 2023 11:49 PM
kSNP4 By Barry G. Hall on Thu Dec 08, 2022 02:14 AM	1	230	By Barry G. Hall on Thu Dec 08, 2022 02:14 AM
Abort (core dumped) By Neelam on Mon Aug 01, 2022 10:59 AM	2	220	By Barry G. Hall on Mon Aug 01, 2022 05:20 PM
Can't run kSNP3. By Aminah on Tue Nov 10, 2020 11:32 AM	1	391	By Aminah on Tue Nov 10, 2020 11:32 AM
Kchooser error By andersgs on Thu Sep 24, 2015 04:22 AM	11	2615	By Hanna on Sat Jul 18, 2020 01:20 AM
Huge memory used in intermed files By Orson on Thu Oct 11, 2018 05:02 PM	2	543	By Iowa on Tue Mar 19, 2019 06:14 AM
Annotation of SNPs By Magnus Jespersen on Mon May 14, 2018 09:35 AM	2	545	By Barry G. Hall on Mon May 14, 2018 04:04 PM
Problem with the parsimony tree By Alexander Banguela Castillo on Fri Mar 16, 2018 12:56 PM	1	802	By Alexander Banguela Castillo on Fri Mar 16, 2018 12:56 PM
Running kSNP with -ML and -min_frac commands By Cristina Kraemer Zimpel on Mon Mar 05, 2018 12:22 PM	2	459	By Barry G. Hall on Mon Mar 05, 2018 05:16 PM
NodeChiSquare2tree3 failing to label tree By David Cleary on Tue Dec 05, 2017 03:28 PM	2	258	By Barry G. Hall on Tue Dec 05, 2017 11:57 PM
Running time kSNP By Vincent Greffe on Mon Aug 14, 2017 10:39 AM	2	444	By Barry G. Hall on Mon Aug 14, 2017 04:15 PM
Stuck at tree generation step By Paul Kirchberger on Mon Nov 16, 2015 10:25 PM	3	1040	By sara silva on Fri Aug 05, 2016 11:45 AM
pKSNP3 terminated because of error file being present. By MathGon on Thu May 19, 2016 01:12 PM	1	836	By MathGon on Thu May 19, 2016 01:12 PM
How to get more SNPs with kSNP? By Bernardo Bello Orti on Tue Aug 27, 2013 10:06 AM	1	368	By Bernardo Bello Orti on Tue Aug 27, 2013 10:06 AM

Topic

Posts

Views

Last Post