Just_Preprocess_My_Reads download

Identifies rRNA, contaminants, trims in a standard fashion etc. Maintains read pairs. Built for fire-and-forget high throughput projects (terabytes of data).

Uses pbzip2, bowtie2, fastx_toolkit, samtools, fastqc, Trimmomatic (optional)

Features

illumina pre-processing
contamination checking

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License

Creative Commons Attribution License

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Additional Project Details

Operating Systems

Linux

Intended Audience

Science/Research

Registered

2013-11-17

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