Identifies rRNA, contaminants, trims in a standard fashion etc. Maintains read pairs. Built for fire-and-forget high throughput projects (terabytes of data).
Uses pbzip2, bowtie2, fastx_toolkit, samtools, fastqc, Trimmomatic (optional)
Features
- illumina pre-processing
- contamination checking
Categories
Bio-InformaticsLicense
Creative Commons Attribution LicenseFollow Just_Preprocess_My_Reads
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