[Jtreeview-cvs] jtreeview commit notification

[Alex S. <av...@us...>]

Update of /cvsroot/jtreeview/LinkedView/src/edu/stanford/genetics/treeview
In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv12946/src/edu/stanford/genetics/treeview

Modified Files:
      Tag: SpellmanBeta
	ContrastSelectable.java MemMonitor.java RCSVersion.java 
	ConfigNodePersistent.java XmlConfig.java Util.java 
	MessagePanel.java NatField.java PpmWriter.java DataModel.java 
	ModelViewProduced.java TreeDrawerNode.java 
	ContainerFocusTracker.java SwingWorker.java 
	CancelableSettingsDialog.java DataMatrix.java ColorPanel.java 
	HeaderInfo.java FileMru.java TreeViewFrame.java Popup.java 
	UrlExtractor.java HidePanel.java ViewFrame.java 
	GeneListMaker.java ConfigNode.java PresetEditor.java 
	LoadException.java TabbedSettingsPanel.java UrlExtractor2.java 
	WaitScreen.java BitmapWriter.java LinearTransformation.java 
	UrlEditor.java HeaderSummary.java DummyHeaderInfo.java 
	ConfigColorSet.java FileSet.java RotateImageFilter.java 
	LinkedViewFrame.java NoValueException.java KnnViewFrame.java 
	DummyConfigNode.java CdtSelection.java TestViewFrame.java 
	LinkedPanel.java GeneFinder.java ColorSetI.java 
	BrowserControl.java Debug.java ModelessSettingsDialog.java 
	UrlPresets.java UrlSettingsPanel.java LogPanel.java 
	FileMruEditor.java ModelViewBuffered.java MainPanel.java 
	ConfigColorSetEditor.java SettingsPanel.java 
	DragGridPanel.java CdtFilter.java FileScanner.java 
	UrlScanner.java Dpoint.java ThreadListener.java ColorIcon.java 
	HeaderSummaryPanel.java TreeSelection.java ModelView.java 
Log Message:

































Index: TreeDrawerNode.java
===================================================================
RCS file: /cvsroot/jtreeview/LinkedView/src/edu/stanford/genetics/treeview/TreeDrawerNode.java,v
retrieving revision 1.5
retrieving revision 1.5.2.1
diff -C2 -d -r1.5 -r1.5.2.1
*** TreeDrawerNode.java	14 Dec 2003 00:08:17 -0000	1.5
--- TreeDrawerNode.java	1 Jul 2004 20:36:19 -0000	1.5.2.1
***************
*** 169,187 ****
      }
  		
! 		public void printSubtree() {
! 			printRecursive("");
  		}
! 		private void printRecursive(String pre) {
! 			if (getLeft() != null) {
! 				System.out.println(pre + getId() + ", corr " + getCorr() +", index " + getIndex());
! 				System.out.println(pre + "Left:");
! 				getLeft().printRecursive(pre + " ");
! 				System.out.println(pre + "Right:");
! 				getRight().printRecursive(pre + " ");
! 			} else {
! 				System.out.println(pre + getId() + " LEAF, corr " + getCorr() +", index " + getIndex());
  			}
- 			
  		}
  
      // instance variables
--- 169,224 ----
      }
  		
! 	public void printSubtree() {
! 		printRecursive("");
! 	}
! 	private void printRecursive(String pre) {
! 		if (getLeft() != null) {
! 			System.out.println(pre + getId() + ", corr " + getCorr() +", index " + getIndex());
! 			System.out.println(pre + "Left:");
! 			getLeft().printRecursive(pre + " ");
! 			System.out.println(pre + "Right:");
! 			getRight().printRecursive(pre + " ");
! 		} else {
! 			System.out.println(pre + getId() + " LEAF, corr " + getCorr() +", index " + getIndex());
  		}
! 		
! 	}
! 	
! 	
! 	/**
! 	 * This method recusivly finds the node with the given id.
! 	 * @param nodeid ID of the node to be found.
! 	 * @return the node found, or null if no such node exists
! 	 */
! 	public TreeDrawerNode findNode(String nodeid)
! 	{
! 		TreeDrawerNode temp;		
! 		
! 		if(getId().equals(nodeid))
! 		{
! 			return this;
! 		}
! 		
! 		if(getLeft() != null)
! 		{
! 			temp = getLeft().findNode(nodeid);
! 			if(temp != null)
! 			{
! 				return temp;
  			}
  		}
+ 		
+ 		if(getRight() != null)
+ 		{
+ 			temp = getRight().findNode(nodeid);
+ 			if(temp != null)
+ 			{
+ 				return temp;
+ 			}
+ 		}		
+ 		
+ 		return null;
+ 		
+ 	}	
  
      // instance variables

















Index: DataMatrix.java
===================================================================
RCS file: /cvsroot/jtreeview/LinkedView/src/edu/stanford/genetics/treeview/DataMatrix.java,v
retrieving revision 1.2
retrieving revision 1.2.2.1
diff -C2 -d -r1.2 -r1.2.2.1
*** DataMatrix.java	14 Dec 2003 00:08:17 -0000	1.2
--- DataMatrix.java	1 Jul 2004 20:36:19 -0000	1.2.2.1
***************
*** 43,46 ****
--- 43,54 ----
  	double getValue(int row, int col);
  
+ 	/**
+ 	 *  Sets the value attribute of an element in the DataMatrix object
+ 	 *
+ 	 * @param  value  value to be set
+ 	 * @param  row  row (gene) of interest
+ 	 * @param  col  column (array) of interest
+ 	 */
+ 	void setValue(double value, int row, int col);
  
  	/**