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Re: [Jmol-users] loading a string from my database in the JmolApplet
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From: Bob H. <ha...@st...> - 2004-11-20 00:45:29
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What you need is some JavaScript that does the following:
(provided 10pre17 works)
molecule="|"+molecule.replace(/\|/g,"")
molecule=molecule.replace(/\r\n/g,"|")
molecule=molecule.replace(/\n/g,"|")
molecule=molecule.replace(/\r/g,"|")
molecule=molecule.replace(/\|/g,"\n|")
This corrects for different browser endline issues.
fr chalaoux wrote:
> Hi All,
>
> I tried to load a string from my database in the JmolApplet .
> The probleme is that the applet is loaded but apparently not the
> molecule in the applet.
>
> Any idea ?
>
> Bye, FR.
>
>
> Code with jmol10 pre17
> ===================
> <html>
> <head>
> <title>nitrogens</title>
> <script src="../jmol/Jmol.js"></script> <!-- REQUIRED -->
> <script language="JavaScript">
> function init() {
> var molecule;
> molecule = document.TheForm.amol.value;
> jmolLoadInline(molecule);
> }
> </script>
> </head>
>
> <body onload="init()">
> <form name="TheForm">
> <input type="text" name="amol" value="REMARK FINAL COORDINATES WRITTEN
> BY NAMD AT TIMESTEP 1000
> ATOM 1 C1 LIG 1 0.708 -1.202 0.152 0.00 0.00 LIG
> ATOM 2 C2 LIG 1 0.813 0.302 0.452 0.00 0.00 LIG
> ATOM 3 C3 LIG 1 -0.563 1.002 0.405 0.00 0.00 LIG
> ATOM 4 C4 LIG 1 -1.701 0.128 -0.154 0.00 0.00 LIG
> ATOM 5 N1 LIG 1 -0.382 -1.824 0.907 0.00 0.00 LIG
> ATOM 6 C5 LIG 1 -1.695 -1.256 0.535 0.00 0.00 LIG
> ATOM 7 C6 LIG 1 1.856 1.000 -0.438 0.00 0.00 LIG
> ATOM 8 N2 LIG 1 3.228 0.639 -0.038 0.00 0.00 LIG
> ATOM 9 C7 LIG 1 4.000 -0.096 -1.050 0.00 0.00 LIG
> ATOM 10 C8 LIG 1 3.989 1.762 0.529 0.00 0.00 LIG
> ATOM 11 N3 LIG 1 -3.014 0.806 -0.023 0.00 0.00 LIG
> ATOM 12 C9 LIG 1 -3.053 2.184 -0.548 0.00 0.00 LIG
> ATOM 13 C10 LIG 1 -4.206 0.065 -0.483 0.00 0.00 LIG
> ATOM 14 C11 LIG 1 -0.365 -3.289 0.762 0.00 0.00 LIG
> ATOM 15 F1 LIG 1 -4.439 -1.057 0.271 0.00 0.00 LIG
> ATOM 16 H1 LIG 1 0.561 -1.398 -0.913 0.00 0.00 LIG
> ATOM 17 H2 LIG 1 1.638 -1.691 0.444 0.00 0.00 LIG
> ATOM 18 H3 LIG 1 1.166 0.408 1.480 0.00 0.00 LIG
> ATOM 19 H4 LIG 1 -0.479 1.919 -0.177 0.00 0.00 LIG
> ATOM 20 H5 LIG 1 -0.836 1.321 1.413 0.00 0.00 LIG
> ATOM 21 H6 LIG 1 -1.514 -0.009 -1.223 0.00 0.00 LIG
> ATOM 22 H7 LIG 1 -2.271 -1.205 1.461 0.00 0.00 LIG
> ATOM 23 H8 LIG 1 -2.205 -1.963 -0.121 0.00 0.00 LIG
> ATOM 24 H9 LIG 1 1.698 0.753 -1.490 0.00 0.00 LIG
> ATOM 25 H10 LIG 1 1.752 2.084 -0.364 0.00 0.00 LIG
> ATOM 26 H11 LIG 1 4.072 0.508 -1.958 0.00 0.00 LIG
> ATOM 27 H12 LIG 1 5.010 -0.284 -0.674 0.00 0.00 LIG
> ATOM 28 F2 LIG 1 3.380 -1.290 -1.314 0.00 0.00 LIG
> ATOM 29 H13 LIG 1 4.215 2.490 -0.254 0.00 0.00 LIG
> ATOM 30 H14 LIG 1 4.920 1.391 0.964 0.00 0.00 LIG
> ATOM 31 H15 LIG 1 3.401 2.242 1.312 0.00 0.00 LIG
> ATOM 32 H16 LIG 1 -2.759 2.196 -1.599 0.00 0.00 LIG
> ATOM 33 H17 LIG 1 -4.060 2.593 -0.450 0.00 0.00 LIG
> ATOM 34 H18 LIG 1 -2.394 2.829 0.033 0.00 0.00 LIG
> ATOM 35 H19 LIG 1 -4.088 -0.200 -1.536 0.00 0.00 LIG
> ATOM 36 H20 LIG 1 -5.084 0.709 -0.393 0.00 0.00 LIG
> ATOM 37 H21 LIG 1 -1.205 -3.722 1.309 0.00 0.00 LIG
> ATOM 38 H22 LIG 1 -0.444 -3.563 -0.293 0.00 0.00 LIG
> ATOM 39 H23 LIG 1 0.566 -3.692 1.168 0.00 0.00 LIG
> ATOM 40 H24 LIG 1 -0.221 -1.609 1.886 0.00 0.00 LIG
> END">
> </form>
> <script>
> jmolSetCodebase("../jmol");
> jmolApplet(200, "");
> </script>
> </body>
>
> </html>
>
>
>
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--
Robert M. Hanson, ha...@st..., 507-646-3107
Professor of Chemistry, St. Olaf College
1520 St. Olaf Ave., Northfield, MN 55057
mailto:ha...@st...
http://www.stolaf.edu/people/hansonr
"Imagination is more important than knowledge." - Albert Einstein
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