From: William R. <whr...@ms...> - 2004-09-30 14:58:53
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Miguel and Tim, Thanks for your advice. Apparently some old pdb files I had been using with Chime are incompatible with Jmol. The 1A3N.pdb hemoglobin structure from the data base works fine in both environments. In response to Miguel's question, I am using the latest version of Jmol for all my displays. Bill Miguel wrote: >>Miguel, >>I was hasty in posting my question, because within the hour I >>rediscovered how I had done this in Chime, and it works fine in Jmol. >>My script syntax is: select protein; select *A; color atoms blue; >>select *B; color atoms red; (or whatever colors you wish). >>However, I now have a different problem. I wanted to use this technique >>in showing the different segments of hemoglobin, but the pdb file for >>this compound appears to be too large for Jmol to handle. >> >> > >uhhh ... which version of Jmol are you using? > > > >>It loads in >>Chime, but does not display in Jmol. Is there a size limit on the >>structures Jmol will handle? >> >> > >There are no limits on model size. Size is limited by available memory. > >Jmol v10 easily handles hemoglobin (1A00.pdb?) with >5K atoms. > > > > >>I had noted earlier that the very large protein ricin failed to load as >>well. >> >> > >I have successfully loaded a full rhinovirus with 348K atoms. Somewhat >slow, but it works. > > >Miguel > > > >------------------------------------------------------- >This SF.net email is sponsored by: IT Product Guide on ITManagersJournal >Use IT products in your business? Tell us what you think of them. Give us >Your Opinions, Get Free ThinkGeek Gift Certificates! Click to find out more >http://productguide.itmanagersjournal.com/guidepromo.tmpl >_______________________________________________ >Jmol-users mailing list >Jmo...@li... >https://lists.sourceforge.net/lists/listinfo/jmol-users > > > > |