Re: [Jmol-users] No menu in JSMol window?

[Powell, H. <har...@im...>]

Hi Jaime

Many thanks for your reply.

This is somewhat embarrassing - I had been developing and testing on a machine running 16.3.3, but deployed to a machine running 14.2.4 from 2014... updating to the most recent release (16.3.3) appears to have cured my problem.

Sometimes it's necessary to keep reasonably up-to-date with the installed software!

Harry Powell
—
Dr Harry Powell
Structural Bioinformatics Group
Dept. Life Sciences
Imperial College London
har...@im...

Phyre2 Developer
www.imperial.ac.uk/phyre2 <http://www.imperial.ac.uk/phyre2>
Twitter for server news
twitter.com/phyre2server <http://twitter.com/phyre2server>
 

On 28/08/2025, 16:14, "Jaime  Prilusky" <jai...@we...> wrote:

    This email from jai...@we... originates from outside Imperial. Do not click on links and attachments unless you recognise the sender. If you trust the sender, add them to your safe senders list <https://spam.ic.ac.uk/SpamConsole/Senders.aspx> to disable email stamping for this address. 

    Check if you're loading pieces from different versions of Jmol.  What version of Jmol are you using? 

    Does the version before latest changes still has a menu?

    Can you run intermediate versions, i.e. with partial changes? Then you may find what change was critical.

    Add to the page a button to open the console. It might help catching other errors.

    jmolButton('console on;','Open console');



    On 28 Aug 2025, at 14:18, Powell, Harry <har...@im...> wrote:

    Caution: External Sender. Do not click on links or open attachments unless you recognize the sender.


    Hi

    I have a JSMol window on a web page that I used to be able to get the menu to appear using the normal methods - right-click in window, click on JSMol logo in bottom right-hand corner - but I've made some changes (well, about three months or so worth of changes) and can no longer get the menu to appear.

    If I right-click or click on the logo, a small pop-up appears (and disappears after a short interval) that says "Application loaded" but get no menu.

    Clearly, I've made a change that is preventing the menu from appearing, but my notes don't offer any clues - so I was wondering what I might have done!

    Any ideas for things that I should investigate?

    The web-page in question has the URL - 

    https://www.sbg.bio.ic.ac.uk/phyre2/webscripts/ligand2.cgi?jobid=9434f01785880904&model=c7xi7A_.2

    Get the JSMol window by clicking "Interactive 3D view in JSmol" (left-hand pane). 

    We only keep the data on disk for 30 days, so if you read this in a few weeks it will not be available!

    Harry Powell
    —
    Dr Harry Powell
    Structural Bioinformatics Group
    Dept. Life Sciences
    Imperial College London
    har...@im...

    Phyre2 Developer
    www.imperial.ac.uk/phyre2 <http://www.imperial.ac.uk/phyre2>
    Twitter for server news
    twitter.com/phyre2server <http://twitter.com/phyre2server>



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