Re: [Jmol-users] No menu in JSMol window?

[Jaime P. <jai...@we...>]

Check if you're loading pieces from different versions of Jmol.
What version of Jmol are you using?

Does the version before latest changes still has a menu?

Can you run intermediate versions, i.e. with partial changes? Then you may find what change was critical.

Add to the page a button to open the console. It might help catching other errors.

jmolButton('console on;','Open console');


On 28 Aug 2025, at 14:18, Powell, Harry <har...@im...> wrote:

Caution: External Sender. Do not click on links or open attachments unless you recognize the sender.


Hi

I have a JSMol window on a web page that I used to be able to get the menu to appear using the normal methods - right-click in window, click on JSMol logo in bottom right-hand corner - but I've made some changes (well, about three months or so worth of changes) and can no longer get the menu to appear.

If I right-click or click on the logo, a small pop-up appears (and disappears after a short interval) that says "Application loaded" but get no menu.

Clearly, I've made a change that is preventing the menu from appearing, but my notes don't offer any clues - so I was wondering what I might have done!

Any ideas for things that I should investigate?

The web-page in question has the URL -

https://www.sbg.bio.ic.ac.uk/phyre2/webscripts/ligand2.cgi?jobid=9434f01785880904&model=c7xi7A_.2

Get the JSMol window by clicking "Interactive 3D view in JSmol" (left-hand pane).

We only keep the data on disk for 30 days, so if you read this in a few weeks it will not be available!

Harry Powell
—
Dr Harry Powell
Structural Bioinformatics Group
Dept. Life Sciences
Imperial College London
har...@im...

Phyre2 Developer
www.imperial.ac.uk/phyre2 <http://www.imperial.ac.uk/phyre2>
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twitter.com/phyre2server <http://twitter.com/phyre2server>



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