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From: <m0...@ya...> - 2025-08-17 20:21:01
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Dear Bob, In Jmol.jar 16.3.33, 16.2.5: $ load =1pgb$ cartoon only$ color structure One strand of the beta sheet, residues 1-9, is not rendered as a beta strand, despite being so designated by the authors of the PDB file: HELIX 1 1 ALA A 23 ASP A 36 1 14 SHEET 1 S1 4 LEU A 12 ALA A 20 0 SHEET 2 S1 4 MET A 1 GLY A 9 -1 SHEET 3 S1 4 LYS A 50 GLU A 56 1 SHEET 4 S1 4 GLU A 42 ASP A 46 -1 (At the end of each SHEET line, 0 means the first strand of a sheet, 1 means parallel to the preceding strand, and -1 means antiparallel.) $ calculate structure$ cartoon Now residues 1-9 are rendered as a beta strand. The same behavior occurs when loading the mmCIF file. I have not looked for nor observed other examples. -Eric |