Re: [Jmol-users] Jmol 16.3.31 released - minor update

[Jaime P. <jai...@we...>]

Thank you for a prompt fix. The archive expands Ok now.
Jaim

On 22 Jul 2025, at 16:13, Robert Hanson via Jmol-users <jmo...@li...> wrote:

Thanks for spotting that. I think I had two processes going at the same time, and the first zip process did not complete before the second started. I have added jsmol.zip to the SourceForge directory:

https://sourceforge.net/projects/jmol/files/Jmol/Version%2016.3/Jmol%2016.3.31/

for now.

On Mon, Jul 21, 2025 at 3:45 PM Theis, Karsten W. via Jmol-users <jmo...@li...<mailto:jmo...@li...>> wrote:
I ran the 16.3.31 jmol app successfully on Windows 11, but I also get an error when trying to unzip the jsmol.zip file (which I did not need in this case, so I am just confirming Jaime's error on a different platform).

--Karsten Theis
________________________________
From: Jaime Prilusky <jai...@we...<mailto:jai...@we...>>
Sent: Monday, July 21, 2025 16:19
To: m0lviz--- via Jmol-users <jmo...@li...<mailto:jmo...@li...>>
Subject: Re: [Jmol-users] Jmol 16.3.31 released - minor update


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Please check jsmol.zip

Received this error when expanding:

Archive:  jsmol.zip
  End-of-central-directory signature not found.  Either this file is not
  a zipfile, or it constitutes one disk of a multi-part archive.  In the
  latter case the central directory and zipfile comment will be found on
  the last disk(s) of this archive.

Jaim

On 21 Jul 2025, at 22:12, Robert Hanson via Jmol-users <jmo...@li...<mailto:jmo...@li...>> wrote:


https://sourceforge.net/projects/jmol/files/Jmol/Version%2016.3/Jmol%2016.3.31/

Jmol.___JmolVersion="16.3.31" // (legacy) also 16.3.32 (swingJS)

bug fix: COMPARE failing
 -- for example:
        load "=3HG5";
        compare {*:A or :C} {*:B or :D} SUBSET{*.CA} ATOMS ROTATE TRANSLATE 2.0;

bug fix: {a}.distance.min({b}) not working
 -- for example:
        load "=3HG5"
        compare {*:A or :C} {*:B or :D} SUBSET{*.CA} ATOMS ROTATE TRANSLATE 2.0
        x= {:A.CA<http://a.ca/>}.distance.min({:B.CA<http://b.ca/>})
        {:A.CA<http://a.ca/>}.property_d = x
        {:B.CA<http://b.ca/>}.property_d = x
        color property_d
        backbone -0.3

bug fix: incommensurately modulated magnetic CIF file reading issues

new feature: set defaultDrawArrowScale -x.x
 -- negative value scales the arrow head width instead of length

 -- for example:
      draw width 0.2 vector {0 0 0} {1 1 1};
      set defaultDrawArrowScale -0.67;



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--
Robert M. Hanson
Professor of Chemistry, Emeritus
St. Olaf College
Northfield, MN
http://www.stolaf.edu/people/hansonr


If nature does not answer first what we want,
it is better to take what answer we get.

-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900

We stand on the homelands of the Wahpekute Band of the Dakota Nation. We honor with gratitude the people who have stewarded the land throughout the generations and their ongoing contributions to this region. We acknowledge the ongoing injustices that we have committed against the Dakota Nation, and we wish to interrupt this legacy, beginning with acts of healing and honest storytelling about this place.
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