Re: [Jmol-users] Read PyMol orientation into JMol

[Powell, H. <har...@im...>]

Hi Angel

That works but I was hoping there might be a way to just read in the orientation. I may have to investigate PyMol methods to save only the orientation in the PSE file.

Harry Powell
—
Dr Harry Powell
Structural Bioinformatics Group
Dept. Life Sciences
Imperial College London
har...@im...

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On 27/05/2025, 09:51, "Angel Herraez" <ang...@ua...> wrote:

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    Hello Harry
    I do not use Pymol, but as far as I have read you can import the PSE file into Jmol.
    Not sure there will be a way to retrieve just orientation, but the whole model should look similar and so include orientation, I gues


     Dr. Angel Herráez
     Biochemistry and Molecular Biology,
     Dept. of Systems Biology, University of Alcalá
     E-28805 Alcalá de Henares  (Madrid), Spain


    ________________________________________
    De: Powell, Harry <har...@im...>
    Enviado: martes, 27 de mayo de 2025 10:29
    Para: jmo...@li... <jmo...@li...>
    Asunto: [Jmol-users] Read PyMol orientation into JMol

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    Hi

    I'm sure this must have been answered many times, but I haven't found the answer so I thought I'd ask.

    I'm using PyMol to generate its optimal view of a protein molecule (doesn't matter which protein), then want to start JSMol with the molecule in the same orientation. How should I proceed?

    Harry Powell
    —
    Dr Harry Powell
    Structural Bioinformatics Group
    Dept. Life Sciences
    Imperial College London
    har...@im...

    Phyre2 Developer
    http://www.imperial.ac.uk/phyre2 <http://www.imperial.ac.uk/phyre2> <http://www.imperial.ac.uk/phyre2 <http://www.imperial.ac.uk/phyre2>>
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