[Jmol-developers] Problem loading GAMESS files in JSmol but not Jmol

[Mark P. <pe...@so...>]

Hi Bob,

I was preparing to update my JSmol version, but there is a problem loading
GAMESS files now (14.31.38).  It works just fine in Jmol, but not in
JSmol.  In JSmol I get:

 ERROR creating model:  TypeError: e.indexOf is not a function.

I tried in the latest Github version (15303) and get a similar error:

ERROR creating model:  TypeError: h.indexOf$I is not a function.

Here's the system.out from the github version:

The Resolver thinks GamessUS
* GAMESS VERSION = 30 JUN 2019 (R1) *

1 ELECTRON INTEGRALS
...... END OF ONE-ELECTRON INTEGRALS ......
transpiler was 3.2.9-v1 now 3.3.1-v1 for java.util.DualPivotQuicksort
19 molecular orbitals read in model 2
Energy for model 2 = -76.3718260301
Molecular dipole for model 2 = {0.0, 0.0, -2.097674}
15 molecular orbitals read in model 6
Energy for model 6 = -76.3718284924
Molecular dipole for model 6 = {0.0, 0.0, -2.094662}
THE HESSIAN WILL NOW BE COMPUTED AT THE STATIONARY POINT.

45.24 cm^-1
35.74 cm^-1
27.63 cm^-1
0.010000000000000002 cm^-1
0.07 cm^-1
0.21 cm^-1
1712.26 cm^-1
3725.4 cm^-1
3847.23 cm^-1
Time for openFile(cache://localLOAD_water (6).out): 1790 ms
reading 42 atoms
ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false
14 models in this collection. Use getProperty "modelInfo" or getProperty
"auxiliaryInfo" to inspect them.

0 function(e, clazz)
at Object.Clazz._getStackTrace (
https://beta.chemcompute.org/site/swingjs/swingjs2.js:15969:8)

1
org.jmol.viewer.Viewer.createModelSetAndReturnError$O$Z$javajs_util_SB$java_util_Mapfunction(a,b,c,g)
at Clazz.exceptionOf (
https://beta.chemcompute.org/site/swingjs/swingjs2.js:14407:32)

2
org.jmol.viewer.Viewer.loadModelFromFile$S$S$SA$O$Z$java_util_Map$javajs_util_SB$javajs_util_SB$I$Sfunction(a,b,c,g,f,h,l,k,n,s)
at clazz.eval (swingjs/j2s/core/core_jmol.z.js:10726:104)

3 org.jmol.script.ScriptEval.cmdLoad$function()
at clazz.eval [as
loadModelFromFile$S$S$SA$O$Z$java_util_Map$javajs_util_SB$javajs_util_SB$I$S]
(swingjs/j2s/core/core_jmol.z.js:10710:230)

4 org.jmol.script.ScriptEval.processCommand$Ifunction(a)
at clazz.eval [as cmdLoad$] (swingjs/j2s/core/core_jmol.z.js:9128:178)

5 org.jmol.script.ScriptEval.commandLoop$Zfunction(a)
at clazz.eval (swingjs/j2s/core/core_jmol.z.js:9056:370)

6 org.jmol.script.ScriptEval.dispatchCommands$Z$Z$Zfunction(a,b,c)
at clazz.eval (swingjs/j2s/core/core_jmol.z.js:9051:339)

7 org.jmol.script.ScriptEval.executeCommands$Z$Zfunction(a,b)
at clazz.eval [as dispatchCommands$Z$Z$Z]
(swingjs/j2s/core/core_jmol.z.js:9045:49)

8 org.jmol.script.ScriptEval.resumeEval$Ofunction(a)
at clazz.eval (swingjs/j2s/core/core_jmol.z.js:8978:218)

9 function()
at clazz.eval [as resumeEval$O] (swingjs/j2s/core/core_jmol.z.js:8981:448)


see Clazz._stack
transpiler was 3.3.1-v1 now 3.2.9-v1 for org.jmol.shape.Echo
vwr handling error condition: TypeError: h.indexOf$I is not a function
TypeError: h.indexOf$I is not a function
TypeError: h.indexOf$I is not a function
at clazz.eval (swingjs/j2s/core/core_jmol.z.js:8385:12)
at clazz.eval (swingjs/j2s/core/core_jmol.z.js:8381:423)
at clazz.eval (swingjs/j2s/core/core_jmol.z.js:8359:489)
at clazz.eval [as
c$$org_jmol_viewer_Viewer$S$javajs_util_SB$O$org_jmol_modelset_ModelSet$javajs_util_BS]
(swingjs/j2s/core/core_jmol.z.js:8349:336)
at Clazz.new_ (
https://beta.chemcompute.org/site/swingjs/swingjs2.js:14777:19)
at clazz.eval [as createModelSet$S$S$javajs_util_SB$O$javajs_util_BS$Z]
(swingjs/j2s/core/core_jmol.z.js:10271:248)
at clazz.eval (swingjs/j2s/core/core_jmol.z.js:10725:127)
at clazz.eval [as
loadModelFromFile$S$S$SA$O$Z$java_util_Map$javajs_util_SB$javajs_util_SB$I$S]
(swingjs/j2s/core/core_jmol.z.js:10710:230)
at clazz.eval [as cmdLoad$] (swingjs/j2s/core/core_jmol.z.js:9128:178)
at clazz.eval (swingjs/j2s/core/core_jmol.z.js:9056:370)
File Error:ERROR creating model: TypeError: h.indexOf$I is not a function
Time for creating model: 759 ms
eval ERROR:
----
load <<<<"?"
Eval
pc:0
1 statements
----
Token[keyword(1/0x8001401) value="load"]
Token[string(4/0x4) value="?"]

END

script ERROR: ERROR creating model: TypeError: h.indexOf$I is not a function
----
load <<<<"?"



Thanks,
Mark