Re: [Jmol-users] Color structural alignment by deviation "RMSD"?

[Robert H. <ha...@st...>]

Eric, I think if you have some sort of alignment data, it shouldn't be a
problem. But you have to define the specification. Are you aligning
residues or atoms? Do you have a mapping algorithm? PyMOL does alignments.
Jmol does not. So you should be able to use PyMOL's algorithm or any other
for that matter, and then extract the data and display it in Jmol. But Jmol
is not an alignment program. By design.

Bob