Re: [Jmol-users] displaying colormap in jmol

[lisensky <lis...@be...>]

I have done something like this by displaying this model with labels.
Example at https://chem.beloit.edu/Warming/pages/structures.html


H7
Jmol version 14.2.2_2014.06.29  2014-06-28 18:17 EXTRACT: ({0:9})

   7  0  0  0  0  0              1 V2000
   -4.50000   0.00000   0.00000 H   0  0  0  0  0  0
   -3.00000   0.00000   0.00000 H   0  0  0  0  0  0
   -1.50000   0.00000   0.00000 H   0  0  0  0  0  0
    0.00000   0.00000   0.00000 H   0  0  0  0  0  0
    1.50000   0.00000   0.00000 H   0  0  0  0  0  0
    3.00000   0.00000   0.00000 H   0  0  0  0  0  0
    4.50000   0.00000   0.00000 H   0  0  0  0  0  0
M  END
 > <JMOL_PARTIAL_CHARGES>
7
1 -0.1
2 -0.05
3 -0.025
4  0.0
5  0.025
6  0.05
7  0.1
$$$$


George Lisensky


On 2/7/19 6:32 AM, Kashi Nath Subedi wrote:
> Hi
> I have color coded atoms in a box according to the charge on them 
> using 'color partialcharge'. I want to have the colormap displayed by 
> the side of the simulation box (color gradiant) but I am unable to do 
> so in jmol. I would appreciate for the help.
> Thank you
>
>
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-- 
George Lisensky                 lis...@be...
Chemistry Department            608-363-2225
Beloit College                  fax 608-363-2052
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Beloit, WI 53511

http://chemistry.beloit.edu/classes/lisensky