From: Kanters, R. <rka...@ri...> - 2016-05-27 17:22:40
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Aha, I found the setting so the Project:Clean... will indeed delete the required folders (i.e., when I pick it now it outputs): Buildfile: /Users/rkanters/Documents/workspace/Jmol/build.xml [echo] version=14.7.0_2016.05.26 clean: [delete] Deleting directory /Users/rkanters/Documents/workspace/Jmol/build/classes [delete] Deleting directory /Users/rkanters/Documents/workspace/Jmol/build/applet-classes [delete] Deleting directory /Users/rkanters/Documents/workspace/Jmol/build/appjars BUILD SUCCESSFUL Total time: 2 seconds It turns out that I need to edit in the 'Properties for Jmol' under the Builders' ant builder (which one may have to add in Mars.2) to use the build.xml file (as I mentioned earlier), but also in the Targets tab for the "During a "Clean:" " do a 'Set Targets...' and pick the 'clean' target. Default a new ant build doesn't seem to be set up to run a 'clean' target, only things are set for the "After a "Clean":' and 'Manual Build:'. Normally when I am playing around with the code I have the Jmol.jar Builder unchecked (so I don't have to build the signed applets and all the other stuff all the time), and only turn it one when I really want the Jmol.jar file. I hope this helps some other people when they switch over to Mars (which I would not suggest because I tried to set it up to use Java 1.6, but it complains that it can not handle anything below Java 1.7).... René > On May 27, 2016, at 12:51 PM, Robert Hanson <ha...@st...> wrote: > > You have to make sure you do > > run as.... and then select the "clean" option. You can't just use Project...clean > > Bob > > On Fri, May 27, 2016 at 10:32 AM, Kanters, Rene <rka...@ri... <mailto:rka...@ri...>> wrote: > I always thought that it 'cleaning' it means that it would remove all those files, which is why I was so surprised that it didn't do it. I guess it has something to do with what is in the build.xml file, but I have never understood the ant build files well enough to mess with those.... > >> On May 27, 2016, at 10:30 AM, Robert Hanson <ha...@st... <mailto:ha...@st...>> wrote: >> >> yes, that's right. If you figure how to make "Project Clean" remove the build files, that would be great. We could set that up. >> >> On Fri, May 27, 2016 at 9:10 AM, Kanters, Rene <rka...@ri... <mailto:rka...@ri...>> wrote: >> I decided to keep an eye on the build folder and noticed that when I did a 'Clean' project the files were not removed. I did an rm -rf in there to start fresh, did a build and now it works... >> >> René >> >>> On May 27, 2016, at 9:05 AM, Kanters, Rene <rka...@ri... <mailto:rka...@ri...>> wrote: >>> >>> Bob, >>> >>> I did clean builds several times to no avail. I am building the Jmol.jar using an ant builder setup for the Properties of Jmol, where I specify it to use Jmol/build.xml buildfile. I think that when I run it directly in Eclipse is may use the Java Builder set up, but that one is not editable, so I can't tell what exactly that does. >>> >>> I also did an 'override and update' to make sure that I pulled everything back as it is on the SVN server. The only files I did not allow to overwrite were the .externalToolBuilders/Jmol.jar.launch (which does not seem to have a version in SVN, probably something new in Mars.2), Settings/org.eclipse.jdt.core.pref and .project. (like I had before). >>> >>> I do indeed not see the org/jmol/api/JmolBioResolver (and am somewhat surprised it isn't echoed as org.jmol.apl), so why is there a script that still seems to know about that and only needs it when I am running the Jmol.jar (using java -jar Jmol.jar) but not when I am running it from within eclipse? >>> >>> René >>> >>>> On May 27, 2016, at 1:44 AM, Robert Hanson <ha...@st... <mailto:ha...@st...>> wrote: >>>> >>>> JmolBioResolver was decommissioned. Perhaps you have not fully synchronized. Try a clean build. >>>> >>>> I have also added those to the release branch, 14.6. >>>> >>>> On Thu, May 26, 2016 at 4:04 PM, Kanters, Rene <rka...@ri... <mailto:rka...@ri...>> wrote: >>>> Hi, >>>> >>>> I just synchronized after having made the changes in the qchem reader this morning, and now find that the application when running in the Eclipse Mars.2 (Release 4.5.2) run the app fine, but that the Jmol.jar I am creating gives an error message when I try to measure things using the console: >>>> >>>> $ measure (c2)(c6) >>>> script ERROR: java.lang.NoSuchMethodError: org.jmol.viewer.Viewer.getJBR()Lorg/jmol/api/JmolBioResolver; >>>> >>>> Does anybody have any idea why that started happening? >>>> >>>> René >>>> >>>> >>>> ------------------------------------------------------------------------------ >>>> Mobile security can be enabling, not merely restricting. Employees who >>>> bring their own devices (BYOD) to work are irked by the imposition of MDM >>>> restrictions. Mobile Device Manager Plus allows you to control only the >>>> apps on BYO-devices by containerizing them, leaving personal data untouched! >>>> https://ad.doubleclick.net/ddm/clk/304595813;131938128;j <https://ad.doubleclick.net/ddm/clk/304595813;131938128;j> >>>> _______________________________________________ >>>> Jmol-developers mailing list >>>> Jmo...@li... <mailto:Jmo...@li...> >>>> https://lists.sourceforge.net/lists/listinfo/jmol-developers <https://lists.sourceforge.net/lists/listinfo/jmol-developers> >>>> >>>> >>>> >>>> >>>> -- >>>> Robert M. Hanson >>>> Larson-Anderson Professor of Chemistry >>>> St. Olaf College >>>> Northfield, MN >>>> http://www.stolaf.edu/people/hansonr <http://www.stolaf.edu/people/hansonr> >>>> >>>> >>>> If nature does not answer first what we want, >>>> it is better to take what answer we get. >>>> >>>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 >>>> >>>> ------------------------------------------------------------------------------ >>>> What NetFlow Analyzer can do for you? Monitors network bandwidth and traffic >>>> patterns at an interface-level. Reveals which users, apps, and protocols are >>>> consuming the most bandwidth. Provides multi-vendor support for NetFlow, >>>> J-Flow, sFlow and other flows. 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Make informed decisions using capacity >>> planning reports. https://ad.doubleclick.net/ddm/clk/305295220;132659582;e_______________________________________________ <https://ad.doubleclick.net/ddm/clk/305295220;132659582;e_______________________________________________> >>> Jmol-developers mailing list >>> Jmo...@li... <mailto:Jmo...@li...> >>> https://lists.sourceforge.net/lists/listinfo/jmol-developers <https://lists.sourceforge.net/lists/listinfo/jmol-developers> >> >> >> ------------------------------------------------------------------------------ >> What NetFlow Analyzer can do for you? Monitors network bandwidth and traffic >> patterns at an interface-level. Reveals which users, apps, and protocols are >> consuming the most bandwidth. Provides multi-vendor support for NetFlow, >> J-Flow, sFlow and other flows. Make informed decisions using capacity >> planning reports. https://ad.doubleclick.net/ddm/clk/305295220;132659582;e <https://ad.doubleclick.net/ddm/clk/305295220;132659582;e> >> _______________________________________________ >> Jmol-developers mailing list >> Jmo...@li... <mailto:Jmo...@li...> >> https://lists.sourceforge.net/lists/listinfo/jmol-developers <https://lists.sourceforge.net/lists/listinfo/jmol-developers> >> >> >> >> >> -- >> Robert M. Hanson >> Larson-Anderson Professor of Chemistry >> St. Olaf College >> Northfield, MN >> http://www.stolaf.edu/people/hansonr <http://www.stolaf.edu/people/hansonr> >> >> >> If nature does not answer first what we want, >> it is better to take what answer we get. >> >> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 >> >> ------------------------------------------------------------------------------ >> What NetFlow Analyzer can do for you? Monitors network bandwidth and traffic >> patterns at an interface-level. Reveals which users, apps, and protocols are >> consuming the most bandwidth. Provides multi-vendor support for NetFlow, >> J-Flow, sFlow and other flows. Make informed decisions using capacity >> planning reports. https://ad.doubleclick.net/ddm/clk/305295220;132659582;e_______________________________________________ <https://ad.doubleclick.net/ddm/clk/305295220;132659582;e_______________________________________________> >> Jmol-developers mailing list >> Jmo...@li... <mailto:Jmo...@li...> >> https://lists.sourceforge.net/lists/listinfo/jmol-developers <https://lists.sourceforge.net/lists/listinfo/jmol-developers> > > > ------------------------------------------------------------------------------ > What NetFlow Analyzer can do for you? Monitors network bandwidth and traffic > patterns at an interface-level. Reveals which users, apps, and protocols are > consuming the most bandwidth. Provides multi-vendor support for NetFlow, > J-Flow, sFlow and other flows. Make informed decisions using capacity > planning reports. https://ad.doubleclick.net/ddm/clk/305295220;132659582;e <https://ad.doubleclick.net/ddm/clk/305295220;132659582;e> > _______________________________________________ > Jmol-developers mailing list > Jmo...@li... <mailto:Jmo...@li...> > https://lists.sourceforge.net/lists/listinfo/jmol-developers <https://lists.sourceforge.net/lists/listinfo/jmol-developers> > > > > > -- > Robert M. Hanson > Larson-Anderson Professor of Chemistry > St. Olaf College > Northfield, MN > http://www.stolaf.edu/people/hansonr <http://www.stolaf.edu/people/hansonr> > > > If nature does not answer first what we want, > it is better to take what answer we get. > > -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 > > ------------------------------------------------------------------------------ > What NetFlow Analyzer can do for you? Monitors network bandwidth and traffic > patterns at an interface-level. Reveals which users, apps, and protocols are > consuming the most bandwidth. Provides multi-vendor support for NetFlow, > J-Flow, sFlow and other flows. Make informed decisions using capacity > planning reports. https://ad.doubleclick.net/ddm/clk/305295220;132659582;e_______________________________________________ > Jmol-developers mailing list > Jmo...@li... > https://lists.sourceforge.net/lists/listinfo/jmol-developers |