[Jmol-commits] SF.net SVN: jmol:[19099] branches/v14_0/Jmol/src/org/jmol/viewer/Jmol. properties

[<ha...@us...>]

Revision: 19099
          http://sourceforge.net/p/jmol/code/19099
Author:   hansonr
Date:     2013-12-13 23:36:19 +0000 (Fri, 13 Dec 2013)
Log Message:
-----------
___JmolVersion="14.0.2"
JmolVersion="14.0.2_2013.12.13"

(note that 14.0 and 14.1 are identical except for version number at this time)

new feature: JavaScript: JSmol api Jmol.evaluateVar(applet, expression)
  -- better than Jmol.evaluate because result is a JavaScript variable, not a string.
  -- DEPRECATING JSmol api Jmol.evaluate(applet, expression)

new feature: getProperty("JSON", ....)
  -- returns JSON code for property
  -- allows JavaScript: x = Jmol.getPropertyAsArray("variableInfo","some expression")
  
new feature: getProperty variableInfo  <expression>
  -- allows retrieval of variables in Java or JSON format
  -- evaluates expression
  -- defaults to "all"
    
new feature: modulation adjustable by q and t, up to d=3
    // modulation on/off  (all atoms)
    // moduation {atom set} on/off
    // modulation int  q-offset
    // modulation x.x  t-offset
    // modulation {t1 t2 t3} 
    // modulation {q1 q2 q3} TRUE 

new feature: pickedList -- ordered array of recently picked atoms
  -- can be used the same as the PICKED variable, 
     but that is ordered sequentially, not temporally
  -- twice clicking off structure clears the list
  -- @{pickedList}[0] last-picked atom
  -- @{pickedList}[-1] next-to-last-picked atom
  -- @{pickedList}[-1][0] last two picked atoms
  
new feature: array.pop(), array.push()
  -- similar to JavaScript
  -- for example:

    // create a distance t-plot
      
    at = [] // t points
    am = [] // distance measurements
    
    var p1 = a.modulation(1e10)[1]
    var p2 = a2.modulation(1e10)[1]
    for (var i = 0; i <= 50; i++) {
      var t = i / 50.0;
      at.push(t);
      var b1 = a.modulation(t)[1];
      var b2 = b.modulation(t)[1];
      var m = distance((p1 + b1).xyz, (p2 + b2).xyz);
      am.push(m);
    }
    d = at.add("\t", am)
  
new feature: modulation scale x.x
new feature: caption "xxxxx" x.x  -- number of seconds to run
new feature: modulation 0.2  // sets t-value
 
new feature: array.pop(), array.push(x)
     a=[];a.push("testing");print a.pop()
new feature: select ON/OFF atom-set
  -- turns selection halos on or off as well as doing the selection
  -- convenience only
  -- for example:
  
  select on _O2
  select off *
  
new feature: pt1.mul3(pt2)  
  -- returns {pt1.x*pt2.x, pt1.y*pt2.y, pt1.z*pt2.z}
  -- if both are not points, reverts to simple multiplication
new reature: array.mul3(pt2) 
  -- applies mul3 to all elements of array

new feature: {atomset}.modulation(type, t) 
  -- delivers P3 (displacement modulation)
  -- implemented only for type="D" (optional)
  -- optional t is 0 by default

bug fix: modulation not distinguishing between q and t;
bug fix: modulated measurements not working

bug fix: not skipping set defaultLattice "{NaN NaN NaN}"
bug fix: isosurface map atomic orbital fails

bug fix: vibrational display of modulation with distances doesn't update
bug fix: vibration off causes unnecessary warning in console
bug fix: draw symop broken

bug fix: array.mul(matrix3f) crashes Jmol

bug fix: select symop=1555 broken
bug fix: set picking dragSelected  not working

code: refactored CifReader, separating out MMCifReader and MSCifReader

code: minor renaming/refactoring of methods in SV
  
code: adds javajs.api.JSONEncodable interface
  -- super-simple implementation in org.jmol.script.SV
  -- allows implementations of javajs to deliver custom JSON results
  

Modified Paths:
--------------
    branches/v14_0/Jmol/src/org/jmol/viewer/Jmol.properties

Modified: branches/v14_0/Jmol/src/org/jmol/viewer/Jmol.properties
===================================================================
--- branches/v14_0/Jmol/src/org/jmol/viewer/Jmol.properties	2013-12-13 23:34:45 UTC (rev 19098)
+++ branches/v14_0/Jmol/src/org/jmol/viewer/Jmol.properties	2013-12-13 23:36:19 UTC (rev 19099)
@@ -113,7 +113,7 @@
   -- allows implementations of javajs to deliver custom JSON results
   
 
-JmolVersion="14.1.1_2013.12.04"
+JmolVersion="14.0.1_2013.12.04"
 JmolVersion="13.3.9_dev_2013.12.04"
 
   

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