Re: [Jmol-users] Can't select an individual chain

[Amjad F. <am...@fa...>]

Chuck,

The command "select *.chainID" works beautiful on my JSmol!

To my understanding, HTML5 tags compromise a number of JSmol features. I do
NOT use HTML tags in my webpage. Just let the browser select the best HTML
available.

Try removing HTML5 tags.

Just some thoughts.




*AMJAD FAROOQ PhD DIC | Associate ProfessorDept of Biochemistry & Molecular
Biology | Miller School of Medicine | University of Miami | Miami | FL
33136Located @ Gautier Building #217 | Mail @ 1011 NW 15th Street #217,
Miami , FL 33136 am...@fa... <am...@fa...> | off
305-243-2429 | lab 305-243-9799 | fax 305-243-3955 | www.farooqlab.net
<http://www.farooqlab.net>*


On Fri, Nov 15, 2013 at 7:41 PM, Charles Gasser <csg...@uc...>wrote:

> Help!
>
> I am trying to select individual proteins in structures of multiprotein
> complexes in Jsmol.
>
> The following commands work great in Jmol:
>
> Select :A
> Select :B
> Select *:A
> Select *:B
>
> Where they select the indicated proteins.  In duplicate pages made in
> Jsmol with the same .pdb file, these commands select all of the protein!
>
> I know that Jsmol can differentiate the chains because if I do 'select
> protein; color chain;' then the different chains are colored differently.
>  But I am unable to individually select them to change the view at my
> command.
>
> Is there another method of selecting part of a molecule (without the need
> to discretely select all atoms) that works in Jsmol.  If you can reply to
> my e-mail.
>
> You can compare these two pages.  The first in Jmol where individual
> selection works:
>
>
> http://www.mcb.ucdavis.edu/courses/molec-structures/121struct/Nuc_Frames.html
>
> The second in Jsmol where individual chain selection does not work (when I
> try it from the console or from editing the file by adding a command on the
> page).
>
> http://www.mcb.ucdavis.edu/courses/jsmol/Nucleosomejsa5.htm
>
> Thanks,
> Chuck Gasser
> Csg...@uc...<mailto:Csg...@uc...>
> ==============
> Charles S. Gasser
> Professor
> Dept. of Molecular and Cellular Biology
> University of California, Davis
> 1 Shields Ave.
> Davis, CA  95616
>
> 104 Briggs Hall
> 530 752-1013
>
>
> ------------------------------------------------------------------------------
> DreamFactory - Open Source REST & JSON Services for HTML5 & Native Apps
> OAuth, Users, Roles, SQL, NoSQL, BLOB Storage and External API Access
> Free app hosting. Or install the open source package on any LAMP server.
> Sign up and see examples for AngularJS, jQuery, Sencha Touch and Native!
> http://pubads.g.doubleclick.net/gampad/clk?id=63469471&iu=/4140/ostg.clktrk
> _______________________________________________
> Jmol-users mailing list
> Jmo...@li...
> https://lists.sourceforge.net/lists/listinfo/jmol-users
>