From: Angel H. <ang...@ua...> - 2013-08-26 10:27:02
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Sorry, Tiqing, but I do not see what the problem is. The proteins in those two pages > http://bdb4.ucsd.edu/bind/jmol_pdb.jsp?pdbid=1GSI&monomerid=50332929 &polymerid=p50000494&seq=100&title=pound34Thymidylate%20kinasepou nd34%20AND%20pound34CHEMBL394429pound34 and > http://bdb4.ucsd.edu/bind/surflex.jsp?PDB=1GSI&HET=TMP look similar to me. What is the defect you are seeing? Also, as I said in my former message, "select model=1.1" is OK, but "select model=3" does not work. You need "select 3.0" or "select file=3" to select all 3 models in that file. Maybe that is the origin of the problem. Try to change to: var jmolcmds = [ "load http://bdb4.ucsd.edu${hmap.url}.pdb", "set appendNew true", "load APPEND http://bdb4.ucsd.edu${hmap.url}_ligand0.mol2", "load APPEND http://bdb4.ucsd.edu${hmap.url}-results.mol2", "set frank off", "model 0", "select 1.1; spacefill off; cpk off; wireframe off; cartoon; color cartoon translucent", "select 2.1; wireframe 80; spacefill 0.35; center hetero; color translucent; zoom 200", "select 3.0; wireframe off; cpk off; spacefill off", "background white", "display all" ]; |