Re: [Jmol-users] JSmol speed test request

[Bays P. <pb...@sa...>]

No.  Same issue.

On Aug 16, 2013, at 4:20 PM, Robert Hanson <ha...@st...> wrote:

> does
> 
> http://chemapps.stolaf.edu/jmol/jsmol1/test2.htm 
> 
> work? 
> 
> 
> On Fri, Aug 16, 2013 at 1:42 PM, Otis Rothenberger <osr...@ch...> wrote:
> If you start by loading small molecules, then all is well (except for the old NCI "wake-up" issue). If you then load from RCSB, you get the line thing. This breaks subsequent small molecule load until you reload the page.
> 
> --
> Otis Rothenberger
> ot...@ch...
> http://chemagic.com
> 
> 
> 
> 
> On Aug 16, 2013, at 2:07 PM, Robert Hanson wrote:
> 
>> This isn't unique to RCSB, right? All structures are totally broken? If not, which links work?
>> 
>> 
>> On Fri, Aug 16, 2013 at 11:44 AM, Bays Philip <pb...@sa...> wrote:
>> Bob:
>> I have tried this on my iPhone (since I do not have any other iOS device) and it works.  (I k now you are asking for speed tests, but I am seeing another issue)   On both my laptop and desktop (both macs) I am getting "structures" that simply consist of lines in the applet, particularly all things loaded from RCSB.  Once in that mode, I have to reload the page to get anything else to work.  This is all in Safari.   Things work fine in firefox.
>> 
>> Anyone else on a mac observing this?
>> 
>> 
>> On Aug 16, 2013, at 10:08 AM, Robert Hanson <ha...@st...> wrote:
>> 
>>> I would very much appreciate feedback on a new option to increase the rendering speed of JSmol. It is an extension of the "wireframeRotation" idea that allows a variable amount of rendering compromise while a model is in motion. Please try 
>>> 
>>> http://chemapps.stolaf.edu/jmol/jsmol1/jsmol.htm
>>> 
>>> Specifically, there are three options under the applet:
>>> 
>>> motion rendering compromises:   fastest   surface/cartoon   none 
>>> 
>>> Please try those with different models -- perhaps 
>>>   =1blu
>>>   caffeine with mep
>>>   (load +) mo homo
>>>   PyMOL session - dna 
>>>   flexible fit
>>> 
>>> dragging the model around to see 
>>> Q: How significant is the speed increase in "surface/cartoon" or "fastest" relative to "none"?
>>> 
>>> Q: Is this a viable solution to the iPad poor-performance problem?
>>> 
>>> Q: Which would you recommend for the default behavior for JSmol?
>>> 
>>> Q: Suggestions?
>>> 
>>> 
>>> Bob
>>> 
>>> 
>>> 
>>> -- 
>>> Robert M. Hanson
>>> Larson-Anderson Professor of Chemistry
>>> St. Olaf College
>>> Northfield, MN
>>> http://www.stolaf.edu/people/hansonr
>>> 
>>> 
>>> If nature does not answer first what we want,
>>> it is better to take what answer we get. 
>>> 
>>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>>> 
>>> ------------------------------------------------------------------------------
>>> Get 100% visibility into Java/.NET code with AppDynamics Lite!
>>> It's a free troubleshooting tool designed for production.
>>> Get down to code-level detail for bottlenecks, with <2% overhead. 
>>> Download for free and get started troubleshooting in minutes. 
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>> 
>> J. Philip Bays
>> Emeritus Professor of Chemistry
>> Department of Chemistry and Physics
>> Saint Mary's College
>> Notre Dame, IN 46556
>> pb...@sa...
>> 
>> 
>> ------------------------------------------------------------------------------
>> Get 100% visibility into Java/.NET code with AppDynamics Lite!
>> It's a free troubleshooting tool designed for production.
>> Get down to code-level detail for bottlenecks, with <2% overhead.
>> Download for free and get started troubleshooting in minutes.
>> http://pubads.g.doubleclick.net/gampad/clk?id=48897031&iu=/4140/ostg.clktrk
>> _______________________________________________
>> Jmol-users mailing list
>> Jmo...@li...
>> https://lists.sourceforge.net/lists/listinfo/jmol-users
>> 
>> 
>> 
>> 
>> -- 
>> Robert M. Hanson
>> Larson-Anderson Professor of Chemistry
>> St. Olaf College
>> Northfield, MN
>> http://www.stolaf.edu/people/hansonr
>> 
>> 
>> If nature does not answer first what we want,
>> it is better to take what answer we get. 
>> 
>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>> 
>> ------------------------------------------------------------------------------
>> Get 100% visibility into Java/.NET code with AppDynamics Lite!
>> It's a free troubleshooting tool designed for production.
>> Get down to code-level detail for bottlenecks, with <2% overhead. 
>> Download for free and get started troubleshooting in minutes. 
>> http://pubads.g.doubleclick.net/gampad/clk?id=48897031&iu=/4140/ostg.clktrk_______________________________________________
>> Jmol-users mailing list
>> Jmo...@li...
>> https://lists.sourceforge.net/lists/listinfo/jmol-users
> 
> 
> ------------------------------------------------------------------------------
> Get 100% visibility into Java/.NET code with AppDynamics Lite!
> It's a free troubleshooting tool designed for production.
> Get down to code-level detail for bottlenecks, with <2% overhead.
> Download for free and get started troubleshooting in minutes.
> http://pubads.g.doubleclick.net/gampad/clk?id=48897031&iu=/4140/ostg.clktrk
> _______________________________________________
> Jmol-users mailing list
> Jmo...@li...
> https://lists.sourceforge.net/lists/listinfo/jmol-users
> 
> 
> 
> 
> -- 
> Robert M. Hanson
> Larson-Anderson Professor of Chemistry
> St. Olaf College
> Northfield, MN
> http://www.stolaf.edu/people/hansonr
> 
> 
> If nature does not answer first what we want,
> it is better to take what answer we get. 
> 
> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
> 
> ------------------------------------------------------------------------------
> Get 100% visibility into Java/.NET code with AppDynamics Lite!
> It's a free troubleshooting tool designed for production.
> Get down to code-level detail for bottlenecks, with <2% overhead. 
> Download for free and get started troubleshooting in minutes. 
> http://pubads.g.doubleclick.net/gampad/clk?id=48897031&iu=/4140/ostg.clktrk_______________________________________________
> Jmol-users mailing list
> Jmo...@li...
> https://lists.sourceforge.net/lists/listinfo/jmol-users

J. Philip Bays
Emeritus Professor of Chemistry
Department of Chemistry and Physics
Saint Mary's College
Notre Dame, IN 46556
pb...@sa...