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Re: [Jmol-users] Jmol/JSmol 13.1.15 and Jmol 13.0.15 released
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From: Robert H. <ha...@st...> - 2013-06-18 13:31:36
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sorry, it's set cartoonLadderS I probably forgot the S there. On Tue, Jun 18, 2013 at 6:22 AM, Frieda Reichsman <fri...@ma...> wrote: > In Jmol 13.1.16_a, "set cartoonladder true/false" is not recognized. Bug? > > > On Jun 17, 2013, at 10:00 AM, Robert Hanson wrote: > > The only change in Jmol.js since 2011 was > > // bh 5/2013 -- fix for master checkbox click not actuating checkboxes > > > > > > On Mon, Jun 17, 2013 at 8:28 AM, Frieda Reichsman <fri...@ma...>wrote: > >> OK, thanks Bob. >> >> On Jun 17, 2013, at 9:15 AM, Robert Hanson wrote: >> >> Oh, OK. I see that Jmol.js wasn't going into the zip file. See >> http://chemapps.stolaf.edu/jmol/Jmol.js >> >> >> >> >> On Sun, Jun 16, 2013 at 9:58 PM, Frieda Reichsman <fri...@ma...>wrote: >> >>> I'm not trying to use JSmol. I will get there at some point but >>> currently I need to stick with Jmol. So-- does that mean there *is* a >>> Jmol.js file I should be seeing somewhere? >>> >>> On Jun 16, 2013, at 9:30 PM, Robert Hanson wrote: >>> >>> Frieda, I think you are downloading the Jmol files. You want >>> >>> http://chemapps.stolaf.edu/jmol/jsmol.zip >>> >>> >>> >>> >>> On Sun, Jun 16, 2013 at 7:37 PM, Frieda Reichsman <fri...@ma...>wrote: >>> >>>> I'd be happy to try this out and report back, but neither of those >>>> files are included in the downloaded folders, either. Where does one get >>>> them? >>>> >>>> >>>> On Jun 16, 2013, at 7:01 PM, Robert Hanson wrote: >>>> >>>> Hi, Frieda. How are you doing? >>>> >>>> JSmol does not use Jmol.js. So that's right, you won't find it there. >>>> I would appreciate your trying this combo instead: >>>> >>>> <script type="text/javascript" src="JSmol.min.js"></script> >>>> <script type="text/javascript" src="Jmol2.js"></script> >>>> >>>> Let me know how that goes. For the most part, that will make older >>>> pages work as though they had Jmol.js. But there will be a few issues I'm >>>> sure with more complicated pages. Read the top comment in Jmol2.js. >>>> >>>> >>>> Bob >>>> >>>> >>>> >>>> >>>> On Sun, Jun 16, 2013 at 5:14 PM, Frieda Reichsman <fri...@ma...>wrote: >>>> >>>>> Thanks Bob, I have downloaded 13.1.15, and 13.1.16_a, but I do not see >>>>> the Jmol.js file in these releases. Where do I find the Jmol.js version >>>>> that would go with these downloads? >>>>> >>>>> On Jun 10, 2013, at 7:53 AM, Robert Hanson wrote: >>>>> >>>>> Frieda, all new features go into Jmol 13.1 only, not Jmol 13.0. Sorry >>>>> for not making that clear. >>>>> >>>>> Also, note that there are already some bug fixes for PyMOL PSE file >>>>> reading particularly. See http://chemapps.stolaf.edu/jmol/Jmol-13.zipfor the latest. >>>>> >>>>> >>>>> On Sun, Jun 9, 2013 at 2:31 PM, Frieda Reichsman <fri...@ma...>wrote: >>>>> >>>>>> >>>>>> On Apr 29, 2013, at 2:15 PM, Robert Hanson wrote: >>>>>> > >>>>>> > new feature: set cartoonLadder -- default TRUE (standard Jmol >>>>>> rendering of nucleic acids), but when FALSE no bases, just "ladders", like >>>>>> PyMOL >>>>>> >>>>>> Hi Bob, >>>>>> >>>>>> I'm using the Jmol application, version 13.0.16, and finding that >>>>>> cartoonLadder is not recognized as a "set" parameter. Also, I saved a state >>>>>> script and it does not appear in the list of set parameters (not sure every >>>>>> one is supposed to be listed but it looks like it). >>>>>> >>>>>> And thanks for implementing this, btw-- it'll be great to have it >>>>>> available in Jmol. >>>>>> >>>>>> Best, >>>>>> Frieda >>>>>> >>>>>> >>>>>> >>>>>> ------------------------------------------------------------------------------ >>>>>> How ServiceNow helps IT people transform IT departments: >>>>>> 1. A cloud service to automate IT design, transition and operations >>>>>> 2. Dashboards that offer high-level views of enterprise services >>>>>> 3. A single system of record for all IT processes >>>>>> http://p.sf.net/sfu/servicenow-d2d-j >>>>>> _______________________________________________ >>>>>> Jmol-users mailing list >>>>>> Jmo...@li... >>>>>> https://lists.sourceforge.net/lists/listinfo/jmol-users >>>>>> >>>>> >>>>> >>>>> >>>>> -- >>>>> Robert M. Hanson >>>>> Larson-Anderson Professor of Chemistry >>>>> St. Olaf College >>>>> Northfield, MN >>>>> http://www.stolaf.edu/people/hansonr >>>>> >>>>> >>>>> If nature does not answer first what we want, >>>>> it is better to take what answer we get. >>>>> >>>>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 >>>>> >>>>> ------------------------------------------------------------------------------ >>>>> How ServiceNow helps IT people transform IT departments: >>>>> 1. A cloud service to automate IT design, transition and operations >>>>> 2. Dashboards that offer high-level views of enterprise services >>>>> 3. A single system of record for all IT processes >>>>> >>>>> http://p.sf.net/sfu/servicenow-d2d-j_______________________________________________ >>>>> Jmol-users mailing list >>>>> Jmo...@li... >>>>> https://lists.sourceforge.net/lists/listinfo/jmol-users >>>>> >>>>> >>>>> >>>>> >>>>> ------------------------------------------------------------------------------ >>>>> This SF.net email is sponsored by Windows: >>>>> >>>>> Build for Windows Store. >>>>> >>>>> http://p.sf.net/sfu/windows-dev2dev >>>>> _______________________________________________ >>>>> Jmol-users mailing list >>>>> Jmo...@li... >>>>> https://lists.sourceforge.net/lists/listinfo/jmol-users >>>>> >>>>> >>>> >>>> >>>> -- >>>> Robert M. Hanson >>>> Larson-Anderson Professor of Chemistry >>>> St. Olaf College >>>> Northfield, MN >>>> http://www.stolaf.edu/people/hansonr >>>> >>>> >>>> If nature does not answer first what we want, >>>> it is better to take what answer we get. >>>> >>>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 >>>> >>>> ------------------------------------------------------------------------------ >>>> This SF.net email is sponsored by Windows: >>>> >>>> Build for Windows Store. >>>> >>>> >>>> http://p.sf.net/sfu/windows-dev2dev_______________________________________________ >>>> Jmol-users mailing list >>>> Jmo...@li... >>>> https://lists.sourceforge.net/lists/listinfo/jmol-users >>>> >>>> >>>> >>>> >>>> ------------------------------------------------------------------------------ >>>> This SF.net email is sponsored by Windows: >>>> >>>> Build for Windows Store. >>>> >>>> http://p.sf.net/sfu/windows-dev2dev >>>> _______________________________________________ >>>> Jmol-users mailing list >>>> Jmo...@li... >>>> https://lists.sourceforge.net/lists/listinfo/jmol-users >>>> >>>> >>> >>> >>> -- >>> Robert M. Hanson >>> Larson-Anderson Professor of Chemistry >>> St. Olaf College >>> Northfield, MN >>> http://www.stolaf.edu/people/hansonr >>> >>> >>> If nature does not answer first what we want, >>> it is better to take what answer we get. >>> >>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 >>> >>> ------------------------------------------------------------------------------ >>> This SF.net email is sponsored by Windows: >>> >>> Build for Windows Store. >>> >>> >>> http://p.sf.net/sfu/windows-dev2dev_______________________________________________ >>> Jmol-users mailing list >>> Jmo...@li... >>> https://lists.sourceforge.net/lists/listinfo/jmol-users >>> >>> >>> >>> >>> ------------------------------------------------------------------------------ >>> This SF.net email is sponsored by Windows: >>> >>> Build for Windows Store. >>> >>> http://p.sf.net/sfu/windows-dev2dev >>> _______________________________________________ >>> Jmol-users mailing list >>> Jmo...@li... >>> https://lists.sourceforge.net/lists/listinfo/jmol-users >>> >>> >> >> >> -- >> Robert M. Hanson >> Larson-Anderson Professor of Chemistry >> St. Olaf College >> Northfield, MN >> http://www.stolaf.edu/people/hansonr >> >> >> If nature does not answer first what we want, >> it is better to take what answer we get. >> >> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 >> >> ------------------------------------------------------------------------------ >> This SF.net email is sponsored by Windows: >> >> Build for Windows Store. >> >> >> http://p.sf.net/sfu/windows-dev2dev_______________________________________________ >> Jmol-users mailing list >> Jmo...@li... >> https://lists.sourceforge.net/lists/listinfo/jmol-users >> >> >> >> >> ------------------------------------------------------------------------------ >> This SF.net email is sponsored by Windows: >> >> Build for Windows Store. >> >> http://p.sf.net/sfu/windows-dev2dev >> _______________________________________________ >> Jmol-users mailing list >> Jmo...@li... >> https://lists.sourceforge.net/lists/listinfo/jmol-users >> >> > > > -- > Robert M. Hanson > Larson-Anderson Professor of Chemistry > St. Olaf College > Northfield, MN > http://www.stolaf.edu/people/hansonr > > > If nature does not answer first what we want, > it is better to take what answer we get. > > -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 > > ------------------------------------------------------------------------------ > This SF.net email is sponsored by Windows: > > Build for Windows Store. > > > http://p.sf.net/sfu/windows-dev2dev_______________________________________________ > Jmol-users mailing list > Jmo...@li... > https://lists.sourceforge.net/lists/listinfo/jmol-users > > > > > ------------------------------------------------------------------------------ > This SF.net email is sponsored by Windows: > > Build for Windows Store. > > http://p.sf.net/sfu/windows-dev2dev > _______________________________________________ > Jmol-users mailing list > Jmo...@li... > https://lists.sourceforge.net/lists/listinfo/jmol-users > > -- Robert M. Hanson Larson-Anderson Professor of Chemistry St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 |
