Re: [Jmol-users] Error Message

[Otis R. <osr...@ch...>]

Bob,

I get the basic flow of what's happening below, so I'll try. My JavaScript is pretty primitive and chaotic, so you'll have considerable clean up to do!

Otis

--
Otis Rothenberger
ot...@ch...
http://chemagic.com

On Jan 11, 2013, at 10:47 AM, Robert Hanson wrote:

> That will take a bit of work. I seem to have missed that. What we are doing there is setting up the MOL file date line. Maybe you can help me by writing the JavaScript equivalent of this:
> 
>     StringXBuilder mol = new StringXBuilder();
>       String version = Viewer.getJmolVersion();
>       Calendar c = Calendar.getInstance();
>       mol.append("\n__Jmol-").append(version.substring(0, 2));
>       TextFormat.rFill(mol, "_00", "" + (1 + c.get(Calendar.MONTH)));
>       TextFormat.rFill(mol, "00", "" + c.get(Calendar.DAY_OF_MONTH));
>       mol.append(("" + c.get(Calendar.YEAR)).substring(2, 4));
>       TextFormat.rFill(mol, "00", "" + c.get(Calendar.HOUR_OF_DAY));
>       TextFormat.rFill(mol, "00", "" + c.get(Calendar.MINUTE));
>       mol.append("3D 1   1.00000     0.00000     0");
>       //       This line has the format:
>       //  IIPPPPPPPPMMDDYYHHmmddSSssssssssssEEEEEEEEEEEERRRRRR
>       //  A2<--A8--><---A10-->A2I2<--F10.5-><---F12.5--><-I6->
>       mol.append("\nJmol version ").append(Viewer.getJmolVersion()).append(
>           " EXTRACT: ").append(Escape.escape(bs)).append("\n");
> 
> 
> Bob
> 
> 
> On Thu, Jan 10, 2013 at 12:58 PM, Otis Rothenberger <osr...@ch...> wrote:
> Bob,
> 
> With JSmol, I'm getting an error message that I don't understand. I'm getting the same message in different contexts:
> 
> TypeError: 'undefined' is not an object (evaluating 'java.util.Calendar.getInstance') 58490 http://chemagic.com/JSmol/j2s/core/core.z.js
> 
> Most recently, I get this with:
> 
> set picking ON;set atomPicking ON;set picking assignAtom_C
> 
> I do NOT get this error if I put it into your Test2 page. In my own page, I get the error on my first click. After that all seems OK.
> 
> In the past, I got this same error when I tried to use getPropertyAsString to extract the molfile. In this case, I cannot get the extracted molfile.
> 
> Does anything obvious come to mind on this error message?
> 
> I should mention that I am currently using pre model kit mode pick callback code to replace atoms until I find the nature of this problem.
> 
> Otis
> 
> --
> Otis Rothenberger
> ot...@ch...
> http://chemagic.com
> 
> 
> 
> 
> 
> 
> 
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> 
> -- 
> Robert M. Hanson
> Larson-Anderson Professor of Chemistry
> Chair, Chemistry Department
> St. Olaf College
> Northfield, MN
> http://www.stolaf.edu/people/hansonr
> 
> 
> If nature does not answer first what we want,
> it is better to take what answer we get. 
> 
> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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