From: Robert H. <ha...@st...> - 2012-10-08 14:14:55
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Easily! If you don't care to choose the color yourself, you can use color {*} property bondCount Or you could specifically color a given coordination number with one of the ways to designate a color: {bondCount=6}.color = "red" {bondCount=4}.color = "[xFF00FF]" {bondCount=5}.color = {200 100 200} {bondCount=3}.color = {0.8 0.2 0.1} Or, alternatively, you could set up your own color scheme: color {*} property bondcount "myscheme=red blue orange green" Bob Hanson On Mon, Oct 8, 2012 at 7:42 AM, Sridhar Neelamraju < nee...@gm...> wrote: > Dear all, > I have been struggling with this for a while now. The information I have > is the coordinates and coordination number of each atom in a 10000 atom > system (e.g. x y z cn). I want to color code the atoms by coordination > number. For e.g. say all atoms with a CN of 4 as red, 6 as blue, 12 as > green, etc. > > Could this be achieved using jmol? I am happy to put my data in any format > that jmol reads (xyz, pdb, etc.). > > Thank you, and warm regards, > Sridhar > > > ------------------------------------------------------------------------------ > Don't let slow site performance ruin your business. Deploy New Relic APM > Deploy New Relic app performance management and know exactly > what is happening inside your Ruby, Python, PHP, Java, and .NET app > Try New Relic at no cost today and get our sweet Data Nerd shirt too! > http://p.sf.net/sfu/newrelic-dev2dev > _______________________________________________ > Jmol-users mailing list > Jmo...@li... > https://lists.sourceforge.net/lists/listinfo/jmol-users > > -- Robert M. Hanson Larson-Anderson Professor of Chemistry Chair, Chemistry Department St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 |