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[Jmol-developers] [ jmol-Bugs-3573830 ] 4B2Q - Load problems
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From: SourceForge.net <no...@so...> - 2012-10-02 16:10:07
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Bugs item #3573830, was opened at 2012-10-02 09:10 Message generated for change (Tracker Item Submitted) made by rhuehne You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=379133&aid=3573830&group_id=23629 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: File Input/Output Group: None Status: Open Resolution: None Priority: 5 Private: No Submitted By: Rolf Huehne (rhuehne) Assigned to: Bob Hanson (hansonr) Summary: 4B2Q - Load problems Initial Comment: Newer versions of Jmol than 11.6.8 have problems loading the asymmetric unit file of PDB entry 4B2Q (Java 1.6.0_35 on Linux). Jmol 11.6.8 loads the structure just fine (see http://www.imb-jena.de/cgi-bin/3d_mapping.pl?CODE=1deh). Jmol 11.8.8 takes about an hour and at least 7 GB of RAM just to tell "no atoms loaded". Jmol 12.2.2 takes several minutes and 1.7 GB of RAM and just displays a few amino acids (see http://www.imb-jena.de/cgi-bin/3d_mapping.pl?CODE=4b2q&JMOLVERSION=12.2.2). Jmol 13.1.4 needs several minutes and the displays the following error message: script ERROR: Error reading file at line 72414: HETATM70077 C2 ATP A1511 140.665 74.194 236.670 1.00 68.34 C Premature EOF for file http://www.imb-jena.de/cgi-bin/idb_send.pl?CODE=4B2Q&MODE=compressed-asymmetricSNP type Pdb ----line 1 command 4 of http://www.imb-jena.de/ImgLibPDB/tmp/4B2Q_snp.pdb.asymmetric.default-3813.jmz: load >> "http://www.imb-jena.de/cgi-bin/idb_send.pl?CODE=4B2Q&MODE=compressed-asymmetricSNP" << ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=379133&aid=3573830&group_id=23629 |